Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6h17
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 98 1e-21
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 60 3e-10
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 59 7e-10
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 58 9e-10
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 55 1e-08
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 52 6e-08
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 52 8e-08
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 50 3e-07
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 48 2e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 47 3e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 46 5e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 45 9e-06
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 43 4e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 41 2e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 5e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 38 0.001
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.008
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 35 0.013
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.071
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 31 0.22
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.38
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 30 0.38
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 30 0.38
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 0.88
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.2
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 28 1.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.0
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 3.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 3.5
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.5
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 4.7
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 6.2
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 6.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 6.2
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 26 6.2
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 6.2
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 26 6.2
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 8.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 8.2
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 8.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.2
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 98.3 bits (234), Expect = 1e-21
Identities = 54/177 (30%), Positives = 102/177 (57%), Gaps = 6/177 (3%)
Frame = +3
Query: 204 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADV-TPEQVPTNIIDICIP 380
+ VR+++ G+ GVGK+SLI +L+ E+ +P I+IP++ + + V ++D
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQSD 61
Query: 381 EQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKID 560
E +A EI++A+VIC+V+S + + +++ +WLP+ R P++L NK +
Sbjct: 62 SNEREYLAAEIKKANVICLVYSDNY--SYERVSIFWLPYFRSL---GVNVPIVLCENKSE 116
Query: 561 LID-----YSVIDNIWDIAEEYPEVDRCIECSAKSLINVSEMFYNAQKAVLHPINPI 716
+D +++ + + E+ E++ CI CSA INV+E+FY + V++PI P+
Sbjct: 117 DLDNYQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELFYMCRACVIYPITPL 173
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 60.1 bits (139), Expect = 3e-10
Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Frame = +3
Query: 195 TVPRTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEE-ITIPADVTPEQVPTNIIDI 371
T R +++++G+ GVGK++L + L+ F + P E+ ++ E +++D
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDT 63
Query: 372 CIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGN 551
E+ + + +V+++ + + ++I+T++ +R + + PV+LV N
Sbjct: 64 AGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTF--PVVLVAN 121
Query: 552 KIDLIDYSVIDNIWDIAEEYPEVDRC--IECSAKSLINVSEMFYNAQKAV 695
K DL V+ E+ + C +E SAK +NV E FY+ + +
Sbjct: 122 KCDLEAERVVSRAE--GEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 58.8 bits (136), Expect = 7e-10
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Frame = +3
Query: 213 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPA-DVTPEQVPTNIIDICIPEQ 386
++LL+G+ GVGK+ L+L + +TE ++ + I ++ + V I D E+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 387 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDLI 566
+ AH I IV+ V Q++ N + WL + E + +LVGNK D++
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVEGVNR--LLVGNKSDMV 126
Query: 567 DYSVIDNIWDIAEEYPEVDRC--IECSAKSLINVSEMFYNAQKAV 695
D V++ + +A+E+ + +E SAK NV + F + +
Sbjct: 127 DKKVVE--YSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQI 169
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 58.4 bits (135), Expect = 9e-10
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
Frame = +3
Query: 213 RILLLGEPGVGKTSLILSLVTEEFTEHV--PPKAEEITIPADVTPEQVPTNIIDICIPEQ 386
+I++LG+ GKTSL L++ T+ + V P E V + ++ D E+
Sbjct: 15 KIVILGDGAAGKTSL-LNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73
Query: 387 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL- 563
+ + HVI I F+VD +++L + T WLP V NCP ++LV K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCP---GVKLVLVALKCDLR 130
Query: 564 ------IDYSVIDNIWD--IAEEYPEVDRCIECSAKSLINVSEMFYNAQKAVL 698
+D+S I + + A + R +ECSAK V+E F A + L
Sbjct: 131 GADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVAL 183
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 54.8 bits (126), Expect = 1e-08
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = +3
Query: 192 ETVPRTVRILLLGEPGVGKTSLILSLVTEEF-TEHVPPKAEEITIPADVTPEQVPTNIID 368
++ P +++++G+ GKTSL+ F TE+VP E V + V + D
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWD 62
Query: 369 ICIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVG 548
E+ +AH+I + F++D ++L ++T W+ + CP P ILVG
Sbjct: 63 TAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCP---NVPFILVG 119
Query: 549 NKIDL 563
K DL
Sbjct: 120 MKADL 124
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 52.4 bits (120), Expect = 6e-08
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Frame = +3
Query: 207 TVRILLLGEPGVGKTSLILSLVTEEF-TEHVPPKAEEITIPADVTPEQVPTNIIDICIPE 383
T++ +++G+ VGKT L++S T +F +++VP + + + E + D E
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQE 62
Query: 384 QSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 563
+ V + FSV + + W P V +CP P ++VG +IDL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCP---GVPCLIVGTQIDL 119
Query: 564 ID 569
D
Sbjct: 120 RD 121
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 52.0 bits (119), Expect = 8e-08
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Frame = +3
Query: 213 RILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDICIPEQSL 392
+++++G+ G GKT L++ + F E P E I D+T + +I++ + + +
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYI-TDITYGP-NSKVIELALWDTAG 73
Query: 393 EQVAEEIE-----RAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKI 557
++ + + ++VI + FS+D +LN + W P V+ CP R P++LVG K
Sbjct: 74 QEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCP---RTPIVLVGLKA 130
Query: 558 DL 563
DL
Sbjct: 131 DL 132
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 50.4 bits (115), Expect = 3e-07
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Frame = +3
Query: 213 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 389
+++++G+ GKT L++ F E +VP E +V + + D E
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 390 LEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL-I 566
+HV+ I FSVD E+L+ + W+ V C P++LVG K+DL
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS---NLPILLVGCKVDLRN 124
Query: 567 DYSVIDNIWDIAEE---YPE---------VDRCIECSAKSLINVSEMFYNAQKAVLHPIN 710
D I+ + +++ + E + +ECSAK V+E+F A +A +
Sbjct: 125 DPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFK 184
Query: 711 P 713
P
Sbjct: 185 P 185
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 47.6 bits (108), Expect = 2e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Frame = +3
Query: 183 MVYETVPRTV-----RILLLGEPGVGKTSLILSLVTEEFTEH----VPPKAEEITIPADV 335
M T P+ V +++LLG+ VGK+SL+L V ++F ++ + T+P D
Sbjct: 1 MASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDE 60
Query: 336 TPEQVPTNIIDICIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCP 515
V I D E+ A+ +V+ + + +L K A W+ ++ P
Sbjct: 61 N-TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAP 118
Query: 516 EDYRKPVILVGNKIDLIDYSVIDNIWDIAEEYPEVDRCI--ECSAKSLINVSEMF 674
E + L GNK+DL D AE Y + E SAK+ NV+E+F
Sbjct: 119 EGI--VIALAGNKLDLAQERRAVEKAD-AEAYAAEANLLFFETSAKTAENVNELF 170
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 46.8 bits (106), Expect = 3e-06
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Frame = +3
Query: 210 VRILLLGEPGVGKTSLILSLVTEEFT-EHVPPKAEEITI-PADVTPEQVPTNIIDICIPE 383
+++LL+G+ GVGK+ L+L + FT + + I ++ +++ I D E
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 384 QSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 563
+ A I +++ V +++ + + T W V + E+ K IL+GNK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT-WFSNVEQHASENVYK--ILIGNKCDC 126
Query: 564 IDYSVI--DNIWDIAEEYPEVDRCIECSAKSLINVSEMFYNAQKAV 695
D + + +A+E + +E SAK+ +NV E F+ + +
Sbjct: 127 EDQRQVSFEQGQALADELGV--KFLEASAKTNVNVDEAFFTLAREI 170
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 46.0 bits (104), Expect = 5e-06
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Frame = +3
Query: 213 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 389
+++++G+ GKT L++ F E +VP E +V V + D E
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 390 LEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL-I 566
+HVI I F+VD ++L+ + W+ V C P++LV K DL
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSS---LPILLVACKADLRN 124
Query: 567 DYSVIDNIWD------IAEEYPEVD------RCIECSAKSLINVSEMFYNAQKAVL 698
D +I+ + EE V + +ECSAK+ V E+F +A +A +
Sbjct: 125 DPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAM 180
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 45.2 bits (102), Expect = 9e-06
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Frame = +3
Query: 210 VRILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPE 383
+++++LGE GVGKTS++ V +F++ A+ +T V + V + D +
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTA-GQ 67
Query: 384 QSLEQVAEEIERAHVICI-VFSVDRQETLNKIATYWLPFVRDNCPEDYRK-PVILVGNKI 557
+ + + R C+ V+ V+ ++ + ++ F+ P + P IL+GNK+
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKV 127
Query: 558 DLIDYS-VIDNIWDIA--EEYPEVDRCIECSAKSLINVSEMFYNAQKAVL 698
D+ + ++ +A + E+ E SAK INV E F K L
Sbjct: 128 DVEEQKRMVSKSKALAFCQARGEIP-YFETSAKEAINVQEAFETVAKLAL 176
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 43.2 bits (97), Expect = 4e-05
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +3
Query: 210 VRILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPE 383
+++++LG+ GVGKT L+ V ++F+ A+ +T V + V + D +
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTA-GQ 67
Query: 384 QSLEQVAEEIERAHVIC-IVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKID 560
+ + + R C IV++V+ ++ + + + F+ ++ P I+VGN+ID
Sbjct: 68 ERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQID 127
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 40.7 bits (91), Expect = 2e-04
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 4/158 (2%)
Frame = +3
Query: 213 RILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPEQ 386
+ +L+G+ GVGK++L++ EF E T + +++ I D E+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 387 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDLI 566
+ A IV+ + +Q + + + WL +R++ D ++LVGNK DL+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGR-WLKELREHA--DSNIVIMLVGNKTDLL 128
Query: 567 DYSVIDNIWDIAEEYPEVDRC--IECSAKSLINVSEMF 674
+ + A+ + + IE SA NV E F
Sbjct: 129 HLRAVST--EEAQAFAAENNLSFIETSAMDASNVEEAF 164
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.5 bits (88), Expect = 5e-04
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Frame = +3
Query: 192 ETVPRTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDI 371
+ VP T +++L+G+ G GKT+ + +T EF K T+ +V P TN +I
Sbjct: 5 QNVP-TFKLVLVGDGGTGKTTFVKRHLTGEFE-----KKYIATLGVEVHPLHFHTNFGEI 58
Query: 372 C--IPEQSLEQVAEEIERAHVI---C--IVFSVDRQETLNKIATYWLPFVRDNCPEDYRK 530
C + + + ++ + + I C I+F V + T + +W VR C
Sbjct: 59 CFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRV-CENI--- 114
Query: 531 PVILVGNKIDLIDYSV 578
P++L GNK+D+ + V
Sbjct: 115 PIVLCGNKVDVKERKV 130
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 37.9 bits (84), Expect = 0.001
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Frame = +3
Query: 204 RTVRILLLGEPGVGKTSLILSLVTEEF--TEHVPPKAEEITIPADVTPEQVPTNIIDICI 377
R +++ LGE VGKTSLI + ++F T + ++ + V + D
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 378 PEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKI 557
E+ + I + V IV+ + + W+ VR +D ++LVGNK
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDV--IIVLVGNKT 126
Query: 558 DLID 569
DL D
Sbjct: 127 DLAD 130
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 35.5 bits (78), Expect = 0.008
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Frame = +3
Query: 207 TVRILLLGEPGVGKTSLILSLV----TEEFTEHVPPKAEEITIPADVTPEQVPTNIIDIC 374
T+++ ++G+ +GKTSL+++ V EE T+ + E TI + ++ +I D+
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTI--SIRNTEITFSIWDLG 67
Query: 375 IPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNK 554
+ + + A I +F + R+ TLN I ++ R + IL+G K
Sbjct: 68 GQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWY----RQARGFNKTAVPILIGTK 123
Query: 555 ID-LIDYSVID--NIWDIAEEYPEVDRC--IECSAKSLINVSEMF 674
D + + D I A Y + + + CS INV ++F
Sbjct: 124 YDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIF 168
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 34.7 bits (76), Expect = 0.013
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = +3
Query: 213 RILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVT--PEQVPTNIIDICIPEQ 386
RI +LG VGK+SL + V F E P E T ++ ++ T IID ++
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIEN-TFSKNIKYKGQEFATEIIDTAGQDE 66
Query: 387 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 563
++ H +V+S+ + + + + E P+++VGNK DL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWV--PIVVVGNKSDL 123
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 32.3 bits (70), Expect = 0.071
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +3
Query: 216 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVP 353
ILL G PGVGKTSLI +L E + V + T D+ VP
Sbjct: 1562 ILLEGSPGVGKTSLITALARETGHQLVRINLSDQTDLMDLFGSDVP 1607
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 204 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVP 299
R VR+LLLG GKT+++ L+ E+ E P
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSP 46
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 219 LLLGEPGVGKTSLILSLVTEEFTEHVP 299
+L+GEPGVGKTS+ L + VP
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVP 232
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 216 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIID 368
+L+LGE G GK++L+ +L+ + PP + +T V PE PT +I+
Sbjct: 98 VLVLGESGSGKSTLVNTLLNRDV---YPPTQKSLTGDFGVNPE--PTVMIN 143
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 216 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEI 317
+LL G PG GKT L ++ TE E V K E+
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVSIKGPEL 724
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.7 bits (61), Expect = 0.88
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 180 KMVYETVPRTVRILLLGEPGVGKTSLILSLVTEE 281
K E V + ++LLGE G GKT+ I + EE
Sbjct: 517 KQFLEAVSKNQILVLLGETGSGKTTQITQYLAEE 550
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 192 ETVPRTVRILLLGEPGVGKTSLILSLV 272
+ P V + ++G PG GK++LI SLV
Sbjct: 69 DEAPPPVIVAVMGPPGTGKSTLIKSLV 95
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 216 ILLLGEPGVGKTSLILSLVTEEF 284
+L G PG GKTS IL+L E F
Sbjct: 55 MLFYGSPGTGKTSTILALSRELF 77
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 271 TNDKISDVLPTPGSPRRSIRTVRGTV 194
TND+ D L TP S RR R+ R ++
Sbjct: 2413 TNDQEEDALATPSSSRRDSRSKRASL 2438
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 219 LLLGEPGVGKTSLILSLV 272
L+LG PG GKT+ I SL+
Sbjct: 952 LILGMPGTGKTTTISSLI 969
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 216 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEIT 320
+LL G PG GKT L ++ TE + A +T
Sbjct: 495 MLLFGPPGTGKTMLARAVATESRSVFFSISASSLT 529
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 552 KIDLIDYSVIDNIWDIAEEYPEVDRCIECSAKSLINVSEMFYNAQKAVL 698
K+D + + +DNI ++E +P + I+ + + + NV+ + A L
Sbjct: 1069 KLDFVLKNELDNILPLSEVFPSLFHAIQATLEKVSNVNGKLNSENVAAL 1117
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 195 TVPRTVRILLLGEPGVGKTSLILSLVTE 278
T+PR L++G G GK++L ++L+ E
Sbjct: 603 TIPRNQFTLVVGSTGSGKSTLAMALLGE 630
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 393 EQVAEEIERAHVIC-IVFSVDRQETLNKIATYWLPFVRDNCPEDY 524
++ AE ++ +C IV+S ETL KI W+ + N ED+
Sbjct: 132 KRFAECFDKNPDLCLIVYSKLEVETLAKITPIWINVAKKNKKEDF 176
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 216 ILLLGEPGVGKTSLILSLVTE 278
+LL G PG GKT L ++ TE
Sbjct: 415 MLLFGPPGTGKTMLARAVATE 435
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 219 LLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 389
L+ G PG GKT IL ++ T + + +P + N I IC P +
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTS--SSQGLQFNVPGQT--RKTSKNKILICAPSNA 1342
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 189 YET--VPRTVRILLLGEPGVGKTSLILSLVTE 278
Y+T +P LL G PG GKTS + +L E
Sbjct: 234 YDTRGIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 341 WRYISRYSYFFSFWRHMFCK 282
WR I ++ F+ RH FCK
Sbjct: 6 WRSILYIAFLFAITRHAFCK 25
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 612 PEVDRCIECSAKSLINVSEMF-YNAQKAVLHPINPI 716
P +D C+E K LIN+++ F Y K + N I
Sbjct: 72 PSMDTCVETLRKLLINLNDSFPYGGDKRGDYAFNRI 107
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 516 EDYRKPVILVGNKIDLIDYSVIDN-IWDIAEEYPEV 620
E K +ILV NK+DL+ SV + +A+EYP +
Sbjct: 244 EASHKHMILVLNKVDLVPTSVAAAWVKILAKEYPTI 279
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 204 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVP 299
R +RIL++G GKT+++ L E +P
Sbjct: 16 REMRILMVGLDAAGKTTILYKLKLGEIVTTIP 47
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 198 VPRTVRILLLGEPGVGKTSL 257
+P+ ILL G PG GKT L
Sbjct: 176 IPQPKGILLYGPPGTGKTLL 195
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 498 VRDNCPEDYRKPVILVGNKIDLIDYSVIDNIWDIAEEYPEVDRCIECSAKSLIN 659
VRD DYRK + LV + L +V +NI A + + IE K+ I+
Sbjct: 1185 VRDYNINDYRKQIALVSQEPTLYQGTVRENIVLGASKDVSEEEMIEACKKANIH 1238
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 204 RTVRILLLGEPGVGKTSLILS 266
R +L G PG GKTS IL+
Sbjct: 55 RVPHMLFYGPPGTGKTSTILA 75
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -1
Query: 427 TCALSISSATCSKDCSGIQISIILVGTCSGVTSAGIVISSAFGGTCSVNSSVTNDKISDV 248
TC +S SS + S S I+ ++GT TS+ I+S+ S +SS ++ S
Sbjct: 113 TCTISTSSLSYSGTISSTSIAPSMIGT---RTSSSYFITSSSSTPSSSSSSSSSSPSSSS 169
Query: 247 LPTPGSPRRS 218
+ S + S
Sbjct: 170 SKSSSSSKSS 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,194
Number of Sequences: 5004
Number of extensions: 54980
Number of successful extensions: 290
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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