Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h13
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   193   2e-50
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   190   1e-49
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.22 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    28   0.88 
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   2.0  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   4.7  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   6.2  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.2  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   6.2  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   6.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   8.2  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.2  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   8.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.2  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   8.2  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  193 bits (470), Expect = 2e-50
 Identities = 97/177 (54%), Positives = 114/177 (64%)
 Frame = +3

Query: 57  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416
           M +C+LGD    D AK   V  M                           SE LIKQIPR
Sbjct: 62  MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121

Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 587
           LLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHVDM  ++L
Sbjct: 122 LLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQL 178


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  190 bits (463), Expect = 1e-49
 Identities = 96/177 (54%), Positives = 116/177 (65%)
 Frame = +3

Query: 57  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416
           M +C+LGD    D AK   V  M                           SE LIKQIPR
Sbjct: 62  MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121

Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 587
           LLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++L
Sbjct: 122 LLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQL 178


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 39   LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 203
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 583 SSGVMSTWPTATERHSTFFIWNLMVPLTSSIFC 485
           S+G   ++ T T R + F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = -1

Query: 279 PRHNVAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 100
           P H +A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 99  RHSRTRRACH 70
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 503 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 396
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 431 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGAV 541
           F + W I P+ SLP G H +E          PN+EG V
Sbjct: 36  FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 48  KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 146
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 365 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 264
           +G+F+ +LF LIQ  +   +  W +   + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 90  VNAVLQSSKDKKRNFLETV 146
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 200  GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 99
            G  L  LW IV+ T   L     + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -3

Query: 166 FRPI*SSTVSKKLRFLSLED*RTAFTHS*SVSRDTLDDILFVREPPITTLGSCK 5
           F  +  S    K   ++ E+ + +F  + SV++D+  D   +++ P+T + SC+
Sbjct: 96  FNVVKESNDKPKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCR 149


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 69  RDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRF 197
           ++ L++ V      SK+  +    T+E Q+   N+D QK   F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +3

Query: 66  SRDTLYECVNAVLQSSKDKK--RNFLETVELQIGLKN--YDPQKDKRFSGTVKLKYI 224
           S DT Y  VNA     +DKK  RN   TV  + G +     P ++       K+ YI
Sbjct: 713 SPDTSYSLVNAFAYCDRDKKNVRNCSFTVIFRDGSEETLCAPTEESMIEWVAKINYI 769


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 387  SESLIKQIPRLLGPGLNKA-GKFPGLLSHQESMTQKIDEVKGTI-KFQMKKVLCLSVAVG 560
            S+ ++    R++G    K    F  +++   S    +DE++ +  K +  ++LC  VA G
Sbjct: 1733 SQLVLHGFQRVIGDNPVKGVAAFQPVIAALVSYINSLDEIQFSRGKSEFYQLLCAIVACG 1792

Query: 561  HVD 569
            H+D
Sbjct: 1793 HID 1795


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 394 H*SSRFPVCWVPV*TKLVNSLVFSPTRS 477
           H S RFP    PV T L NSL++  T S
Sbjct: 903 HVSGRFPQVSSPVNTALSNSLLYIRTLS 930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,256
Number of Sequences: 5004
Number of extensions: 49428
Number of successful extensions: 152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)