Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6h10
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 262 3e-71
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 223 2e-59
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 132 4e-32
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 128 5e-31
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 122 4e-29
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 122 4e-29
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 118 9e-28
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 113 2e-26
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 96 3e-21
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 93 3e-20
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 76 3e-15
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 73 3e-14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 72 7e-14
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 70 2e-13
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 69 4e-13
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 69 4e-13
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 68 1e-12
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 64 2e-11
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 37 0.003
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 36 0.003
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 34 0.018
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 33 0.042
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 32 0.074
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 31 0.13
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 31 0.13
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 31 0.17
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 30 0.23
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.52
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 0.91
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 28 0.91
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 1.6
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 1.6
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.9
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 6.4
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 8.5
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 8.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 8.5
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 262 bits (642), Expect = 3e-71
Identities = 118/169 (69%), Positives = 148/169 (87%), Gaps = 2/169 (1%)
Frame = +1
Query: 103 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 282
M+ +KK LLKVIILG+SGVGKTS+MNQ+VN+KFS YKATIGADFLTKEV+VDD++VT+Q
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 283 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPF 462
+WDTAGQERFQSLGVAFYRGADCCVLV+DV +F++L+SWRDEFLIQASP +P+ FPF
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120
Query: 463 VILGNKVDLD--NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQ 603
++LGNKVD++ R VS + +CQ++ +IPYFETSAKEA+NV+ AF+
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFE 169
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 223 bits (545), Expect = 2e-59
Identities = 106/171 (61%), Positives = 139/171 (81%), Gaps = 4/171 (2%)
Frame = +1
Query: 103 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 282
MS++K++ LKV+ILGDSGVGKT LMNQFVN+KFS +YKATIGADFLTK+V+VDD++VT+Q
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 283 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPF 462
+WDTAGQERFQSLG+AFYRGADCCV+V++V +F S+E+WR EFL Q S +D FPF
Sbjct: 61 LWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS-QDECAFPF 119
Query: 463 VILGNKVDLD--NRAVSVKRGQQWCQSK--NDIPYFETSAKEAVNVELAFQ 603
+I+GN++D D RAVS+ R +C+SK +++ +FE SAKE NV F+
Sbjct: 120 IIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFE 170
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 132 bits (319), Expect = 4e-32
Identities = 64/161 (39%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Frame = +1
Query: 124 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQ 303
L K +++GDSGVGK++L+ +F +F+ + K+TIG +F T+ +++D++ + QIWDTAGQ
Sbjct: 10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQ 69
Query: 304 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKV 483
ER++++ A+YRGA ++V+D+T ++F ++ W E A N +++GNK
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKT 125
Query: 484 DLDN-RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQ 603
DL + RAVS + Q + ++N++ + ETSA +A NVE AFQ
Sbjct: 126 DLLHLRAVSTEEAQAFA-AENNLSFIETSAMDASNVEEAFQ 165
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 128 bits (310), Expect = 5e-31
Identities = 65/159 (40%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Frame = +1
Query: 130 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 309
K++ LG+ VGKTSL+ +F+ +F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 310 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 489
F+SL ++ R + ++V+D+T N+F + E W ++ + D+ V++GNK DL
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG----DDVIIVLVGNKTDL 128
Query: 490 -DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQ 603
D R V+ + G++ + I + ETSAK NV+L F+
Sbjct: 129 ADKRQVTQEEGEKKAKELK-IMHMETSAKAGHNVKLLFR 166
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 122 bits (294), Expect = 4e-29
Identities = 65/160 (40%), Positives = 100/160 (62%), Gaps = 3/160 (1%)
Frame = +1
Query: 130 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRI-VTMQIWDTAGQE 306
K+++LGDS VGK+SL+ +FV +F + ++TIGA FLT+ + +D+ V ++IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 307 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 486
R++SL +YR A+C ++V+D+T + + +SW E QA P+ + GNK+D
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA----PEGIVIALAGNKLD 131
Query: 487 L--DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAF 600
L + RAV + + N + +FETSAK A NV F
Sbjct: 132 LAQERRAVEKADAEAYAAEAN-LLFFETSAKTAENVNELF 170
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 122 bits (294), Expect = 4e-29
Identities = 62/167 (37%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
Frame = +1
Query: 103 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 282
M+ L K++++GDSGVGK+ L+ +F + ++ Y +TIG DF + ++ + V +Q
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 283 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPF 462
IWDTAGQERF+++ ++YRGA ++V+DVT ++F +++ W E A +
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA----VEGVNR 116
Query: 463 VILGNKVDL-DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAF 600
+++GNK D+ D + V +++ S N IP+ ETSAK++ NVE AF
Sbjct: 117 LLVGNKSDMVDKKVVEYSVAKEFADSLN-IPFLETSAKDSTNVEQAF 162
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 118 bits (283), Expect = 9e-28
Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Frame = +1
Query: 124 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQ 303
L+K++++GDSGVGK+ L+ +F F+ + TIG DF + + +D + + +QIWDTAGQ
Sbjct: 9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68
Query: 304 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKV 483
ERF+++ A+YRGA +L++DVT +F ++ +W AS +N +++GNK
Sbjct: 69 ERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS----ENVYKILIGNKC 124
Query: 484 DL-DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAF 600
D D R VS ++GQ + + E SAK VNV+ AF
Sbjct: 125 DCEDQRQVSFEQGQALADELG-VKFLEASAKTNVNVDEAF 163
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 113 bits (271), Expect = 2e-26
Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%)
Frame = +1
Query: 124 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIV----DDRIVTMQIWD 291
L+K+++ G SG GK+ L+ +FV ++ +Q T+G DF ++ + V + + +QIWD
Sbjct: 9 LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWD 68
Query: 292 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 471
TAGQE+F+S+ +YRGA VLV+DVT ++F+ L SW + A P V+
Sbjct: 69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMA----PSTICVVLA 124
Query: 472 GNKVDLDN-RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAF 600
G+K DL N R VS + ++C K+ ETS+ NVE F
Sbjct: 125 GSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECF 168
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 96.3 bits (229), Expect = 3e-21
Identities = 54/158 (34%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Frame = +1
Query: 130 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 309
K++++GD GVGK++L Q + F ++Y TI D K+ +D + + DTAGQE
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI-EDSYRKKCEIDGEGALLDVLDTAGQEE 68
Query: 310 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 489
+ ++ + R + +LV+++T+ ++F + ++ + L +D D FP V++ NK DL
Sbjct: 69 YSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQIL---RVKDKDTFPVVLVANKCDL 125
Query: 490 D-NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAF 600
+ R VS G+Q +S + + Y ETSAK +NVE AF
Sbjct: 126 EAERVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAF 162
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 93.1 bits (221), Expect = 3e-20
Identities = 49/157 (31%), Positives = 82/157 (52%)
Frame = +1
Query: 130 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 309
K++++GD G GKT+ + + + +F +Y AT+G + + + +WDTAGQE+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 310 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 489
L +Y C +++FDVT+ T+K++ W + + R +N P V+ GNKVD+
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV-----RVCENIPIVLCGNKVDV 125
Query: 490 DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAF 600
R V K K ++ Y++ SAK N E F
Sbjct: 126 KERKVKAK--AITFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 76.2 bits (179), Expect = 3e-15
Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Frame = +1
Query: 100 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI-VDDRIVT 276
K S+ + K++++GD G GKT L+ F + F +Y T+ +++T + +++
Sbjct: 6 KSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIE 65
Query: 277 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDN 453
+ +WDTAGQE + L Y ++ +L F + P + ++ E W E + PR
Sbjct: 66 LALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPE-VQHFCPRT--- 121
Query: 454 FPFVILGNKVDL--DNRAVSVKRGQ-------QWCQS---KNDIPYFETSAKEAVNVELA 597
P V++G K DL D A V R Q Q QS + PY E SAKE V
Sbjct: 122 -PIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEV 180
Query: 598 FQ 603
FQ
Sbjct: 181 FQ 182
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 72.9 bits (171), Expect = 3e-14
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Frame = +1
Query: 97 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 276
C S +K + K++ILGD GKTSL+N F F Y+ TI +++ ++ VD +
Sbjct: 4 CFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYI-HDIFVDGNSIE 62
Query: 277 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNF 456
+ +WDTAGQE + L Y ++ F V + + SLE+ ++L + S P
Sbjct: 63 LSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRD---SLENVITKWLPEVSSNCP-GV 118
Query: 457 PFVILGNKVDL---------DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAF 600
V++ K DL ++ + + G + N + Y E SAK V AF
Sbjct: 119 KLVLVALKCDLRGADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF 175
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 71.7 bits (168), Expect = 7e-14
Identities = 39/128 (30%), Positives = 75/128 (58%)
Frame = +1
Query: 130 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 309
K++++GD GKTSL++ F F +Y T+ ++++ + VD + V + +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSVQLALWDTAGQEE 68
Query: 310 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 489
++ L Y A ++ F + +P+ SLE+ +++ + + P N PF+++G K DL
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPD---SLENVSTKWIEEINTLCP-NVPFILVGMKADL 124
Query: 490 DNRAVSVK 513
+ V+++
Sbjct: 125 RSDPVAIE 132
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 70.1 bits (164), Expect = 2e-13
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 118 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTA 297
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R + + +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHIELALWDTA 62
Query: 298 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVILG 474
GQE + L Y + ++ F V AP + ++ E W E L S N P +++G
Sbjct: 63 GQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-----NLPILLVG 117
Query: 475 NKVDLDN 495
KVDL N
Sbjct: 118 CKVDLRN 124
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 69.3 bits (162), Expect = 4e-13
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
Frame = +1
Query: 130 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 309
++ +LG VGK+SL Q+V F Y TI F +K + + +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 310 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 489
+ L G VLV+ +T+ ++F+ ++ RD+ L + + P V++GNK DL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKIL---NHTGTEWVPIVVVGNKSDL 123
Query: 490 D-NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQ 603
RAV+ + G+ ++ + E SA+ NV AF+
Sbjct: 124 HMQRAVTAEEGKA-LANEWKCAWTEASARHNENVARAFE 161
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 69.3 bits (162), Expect = 4e-13
Identities = 30/99 (30%), Positives = 54/99 (54%)
Frame = +1
Query: 112 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWD 291
+ + +KV ++GDS +GKTSLM +V F + T+G +F+ K + + + +T IWD
Sbjct: 6 KNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWD 65
Query: 292 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESW 408
GQ F ++ A + +FD++ +T S++ W
Sbjct: 66 LGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 67.7 bits (158), Expect = 1e-12
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Frame = +1
Query: 127 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 306
+K +++GD VGKT L+ + KF + Y T+ ++ V++ D T+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVT-VMIGDEPYTLGLFDTAGQE 62
Query: 307 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVILGNKV 483
+ L Y D ++ F VT+P +F+++ E W E + P P +I+G ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPE-VHHHCP----GVPCLIVGTQI 117
Query: 484 DL-DNRAVSVKRGQQ 525
DL D+ +V K +Q
Sbjct: 118 DLRDDPSVQQKLARQ 132
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 64.1 bits (149), Expect = 2e-11
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Frame = +1
Query: 118 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTA 297
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R V + +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHVELALWDTA 62
Query: 298 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDE---------FLIQASPRDP 447
GQE + L Y + ++ F V +P++ ++ E W E L+ A D
Sbjct: 63 GQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADL 122
Query: 448 DNFPFVILGNKVDLDNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQ 603
N P I+ + V+ + GQ Q Y E SAK V F+
Sbjct: 123 RNDP-KIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFE 173
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 36.7 bits (81), Expect = 0.003
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +1
Query: 127 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 306
+++++LG GKT+++ K NQ TI E + I +WD GQ+
Sbjct: 22 MRILMLGLDAAGKTTILY----KLKLNQSVVTIPTVGFNVETVTYKNI-KFNVWDVGGQD 76
Query: 307 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 486
+ + L ++ G + V D N + R E S R+ + ++L NK D
Sbjct: 77 KIRPLWRHYFTGTKGLIFVVDSADSN---RISEARQELHRIISDREMRDCLLLVLANKQD 133
Query: 487 L 489
L
Sbjct: 134 L 134
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 36.3 bits (80), Expect = 0.003
Identities = 23/112 (20%), Positives = 48/112 (42%)
Frame = +1
Query: 94 LCKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIV 273
+ + K+ ++V++LG GKT+++ +N+ N+ T G T EV +
Sbjct: 6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDV-NEVSPTFGFQIRTLEV----EGL 60
Query: 274 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQ 429
IWD GQ+ ++ ++ + + V D + + E L++
Sbjct: 61 RFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVE 112
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.9 bits (74), Expect = 0.018
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Frame = +1
Query: 130 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGA--DFLTKEVIVDDRIVTMQIWDTAGQ 303
KV+++G SG GK+S M V + + +GA D V +V + +WD GQ
Sbjct: 4 KVLLMGRSGSGKSS-MRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 304 ERFQSLGVA-----FYRGADCCVLVFDVTAPNTFKSLESWRD--EFLIQASPR 441
E F ++ +R + VFDV + + L ++R+ E + SP+
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQ 114
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 32.7 bits (71), Expect = 0.042
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +1
Query: 97 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 276
CK RK + V ILG S GK+SL+N N++ S G EV+VD
Sbjct: 232 CKEVLRKGI--NVAILGPSNAGKSSLINLLANRRIS-IVSPQSGTTRDAIEVLVDINGFP 288
Query: 277 MQIWDTAG 300
+ + DTAG
Sbjct: 289 VLLSDTAG 296
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 31.9 bits (69), Expect = 0.074
Identities = 24/123 (19%), Positives = 55/123 (44%)
Frame = +1
Query: 127 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 306
++++++G GKT+++ + + TIG + T V+ R ++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYRNISFTVWDVGGQD 72
Query: 307 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 486
+ + L +++ + V D N + + +E + + + ++ NK D
Sbjct: 73 KIRPLWRHYFQNTQGIIFVVD---SNDRERISEAHEELQRMLNEDELRDALLLVFANKQD 129
Query: 487 LDN 495
L N
Sbjct: 130 LPN 132
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 100 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNK 195
K SS+K + L ++++GD G+G+T+ +N K
Sbjct: 44 KKSSKKGIPLNLMVVGDVGLGRTAFINTLCEK 75
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 31.1 bits (67), Expect = 0.13
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 112 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLT-KEVIVD-DRIVTMQI 285
R + + +I++G+S +GKT+ +N F+ +N ++ DF+ K + D D+ + I
Sbjct: 114 RNGIDINLIVVGESSLGKTTFVNSFLQSNDTN-FRPKKTMDFVEHKATLSDGDQKFNLTI 172
Query: 286 WDTAG 300
DT G
Sbjct: 173 VDTPG 177
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 112 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADF 237
R+ V++LG+SG GK++L+N +N+ + ++ DF
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDF 132
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 30.3 bits (65), Expect = 0.23
Identities = 27/119 (22%), Positives = 55/119 (46%)
Frame = +1
Query: 130 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 309
K++ LG GKT+L++ N + + + T+ ++E+ + + V +D G ++
Sbjct: 22 KMLFLGLDNAGKTTLLHMLKNDRLAVM-QPTLHPT--SEELAIGN--VRFTTFDLGGHQQ 76
Query: 310 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 486
+ L ++ + V + D F+ L + E + + PF+ILGNK+D
Sbjct: 77 ARRLWRDYFPEVNGIVYLVDCC---DFERLSESKAELDALLAMEELARVPFLILGNKID 132
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 0.52
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Frame = +1
Query: 100 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDR-IVT 276
K+S + + ++G GKT+L++ F+N +N + T + E R +V
Sbjct: 413 KVSKYDRNVFLCFVVGSKSCGKTALLSSFIN---NNTNRLTPNTVVNSVEFQSTQRYLVL 469
Query: 277 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNF 456
+I +T + + D L++D + PN+F + + L+ P D
Sbjct: 470 SEIGETDLDILAEPKSL---EACDILCLLYDSSNPNSFSFIAN-----LLNLYP-DLQKI 520
Query: 457 PFVILGNKVDLDNR 498
P V K DLD +
Sbjct: 521 PCVFAATKADLDRQ 534
Score = 28.3 bits (60), Expect = 0.91
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 127 LKVIILGDSGVGKTSLMNQFVNK 195
++V+I GD GVGK+SL++ + +
Sbjct: 4 VRVVICGDQGVGKSSLISALIQE 26
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 100 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGAD 234
K+ SR + +++ G+SG+GKT+ F N FS K+ +G +
Sbjct: 20 KIVSRNGVAFTLMLCGESGLGKTT----FCNTLFSTTIKSHMGPE 60
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 0.91
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 274 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN 384
T +IWD +++ +L V + G D VL ++ PN
Sbjct: 315 TFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPN 351
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 389 NVLGAVTSKTNTQQSAPR*KATPSDWNRSWPAVSHICIVTILSSTITSFVRK 234
N L + S TNT + + T S+WN +SH + +L + IT F +K
Sbjct: 129 NQLSVIRSSTNTVKGRKKNPTTNSNWN----GISH--VNALLDAIITLFQKK 174
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 88 KLLCKMSSRKKLL--LKVIILGDSGVGKTSLMNQFVNK 195
K L S++KKL L V ++G VGK+S++N VN+
Sbjct: 255 KSLKSYSAKKKLKSSLTVGVIGYPNVGKSSVINALVNR 292
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 284 ICIVTILSSTITSFVRKSAPIVALYWLENFL 192
I +V++++ T+ + + +API YW + F+
Sbjct: 373 IMVVSMIAFTVGTILIATAPIHQTYWAQTFV 403
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +1
Query: 133 VIILGDSGVGKTSLMNQFVNKKFS----NQYKATIGADFLTKEVIVDDRIVTMQIWDTAG 300
V +LG GK++L+N FS ++ + T +L+K + I+ M + T G
Sbjct: 42 VAVLGSQSTGKSTLLNNLFGTSFSVMDASKRQQTTKGIWLSK--ANNSPILVMDVEGTDG 99
Query: 301 QER 309
+ER
Sbjct: 100 RER 102
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 88 KLLCKMSSRKKLLLKVIILGDSGV 159
KL+C S+K L K+++ GD+ V
Sbjct: 525 KLVCDFESKKPTLEKLLVWGDNHV 548
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/21 (33%), Positives = 18/21 (85%)
Frame = +1
Query: 133 VIILGDSGVGKTSLMNQFVNK 195
++++G++G GK++ + QF+N+
Sbjct: 115 IVVVGETGSGKSTQIPQFLNE 135
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +1
Query: 133 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI 255
+++ G+SG GKT + + + T+G+ + +++I
Sbjct: 166 ILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQII 206
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 8.5
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Frame = +1
Query: 208 QYKATIGADFLTKEVIVDDRIVTMQIWDTAGQERFQSLGVA-----FYRGADCCVLVFDV 372
Q I F V D+IV +++W + A FYR + +V
Sbjct: 752 QQSVKITEPFKRSSSNVHDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEV 811
Query: 373 TAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDLDNRAVSV 510
A + E Q + DP + P L + +++R ++V
Sbjct: 812 AAAYELNEPVDYAIERFCQFTALDPSSVPGTQLNTAIKVEDRIITV 857
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,591
Number of Sequences: 5004
Number of extensions: 56459
Number of successful extensions: 239
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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