Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h10
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.14 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 369 RNCPQHV*VLRELERRIPD 425
           +N PQH  +LREL ++IPD
Sbjct: 376 QNHPQHPDILRELLKKIPD 394


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 122 SFFREDILHNNFYTMMKNTI*SHSLSALLTSNEIDGK 12
           ++F ED+  N+FY M+ +      LS  L   +I G+
Sbjct: 220 NYFTEDVGLNHFYFMLNHNYPPFMLSNSLNFPQIRGE 256


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 122 SFFREDILHNNFYTMMKNTI*SHSLSALLTSNEIDGK 12
           ++F ED+  N+FY M+ +      LS  L   +I G+
Sbjct: 220 NYFTEDVGLNHFYFMLNHNYPPFMLSNSLNFPQIRGE 256


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 603 LKS*LYIDSFFGTCLKIRD 547
           L S +++ SFFG C  IR+
Sbjct: 58  LGSIIFVISFFGCCGAIRE 76


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 63  LITLFVCTFDIKRN 22
           LITLFVC   +K N
Sbjct: 669 LITLFVCGVFLKHN 682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,237
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)