Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h08
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    28   1.4  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   1.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.3  
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    26   4.3  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   7.5  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.9  

>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 157 FYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIEN 291
           FYR+S  N    +  Y          + +P F R W+NT  +I+N
Sbjct: 7   FYRLSSKNLLSFKTCYSFYSTKASSPLPQPSFRRFWKNTATKIQN 51


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 172 PFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTL 276
           PF+ S+  DRY++SPY+  R+  +P  Y    N L
Sbjct: 280 PFS-SLPLDRYQISPYSCLRNTGDPWEYMSRSNGL 313


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/74 (25%), Positives = 28/74 (37%)
 Frame = +1

Query: 157  FYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIENVMKPIEQLTSAMNQM 336
            FY       S+  D +    YN   DVF+ + Y   +  L   + V+        A  Q 
Sbjct: 1698 FYTAFECMSSLKSDSHDTEEYNDLMDVFQKKIYLASQLVLHGFQRVIGDNPVKGVAAFQP 1757

Query: 337  ALQEMGSKITSNDE 378
             +  + S I S DE
Sbjct: 1758 VIAALVSYINSLDE 1771


>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 511 FIRRYALPQGCLPDTVESKLSSDGVLTVTAPKV 609
           F R   +P     D +E+  S+ G+LTVT PKV
Sbjct: 100 FSRTITIPAKIDADRIEANFSN-GLLTVTLPKV 131


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 74  KRCQFCHTCTIWRDHFV*WIEN 139
           K C+ C+ C    DH   WI N
Sbjct: 172 KHCRLCNICVEKFDHHCIWINN 193


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 214 ETFCSGHDASIG*KATSCRNPAGRRVLDPSDEMVS 110
           E  C G +  +  K T+  N     +LDP+D  V+
Sbjct: 240 EIICQGREFQVQHKLTNKGNKTFEDILDPADNTVA 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,819
Number of Sequences: 5004
Number of extensions: 51978
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)