Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6h08
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 36 0.039
03_02_0484 + 8805053-8805538 36 0.039
03_02_0483 - 8804021-8804485 36 0.039
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.039
01_01_0229 - 1943473-1943922 36 0.039
03_02_0478 + 8775892-8776377 35 0.051
01_01_0231 + 1951047-1951499 35 0.068
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 34 0.090
11_02_0041 - 7669692-7670312 34 0.12
01_01_0227 + 1933247-1933699 34 0.12
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 31 1.1
02_05_0494 + 29486960-29487454 29 2.6
05_07_0248 - 28651807-28651908,28652001-28652061,28652164-286522... 29 3.4
05_04_0240 + 19325981-19326260,19327135-19327156,19327361-193274... 29 3.4
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 29 3.4
01_01_0599 - 4448290-4448790 29 3.4
01_01_0228 + 1940149-1940649 29 3.4
08_01_0863 + 8437188-8437337,8437649-8437739,8437913-8438002,843... 29 4.5
04_04_0947 - 29583775-29583931,29584030-29584256 29 4.5
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 29 4.5
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 28 5.9
03_03_0165 + 14982725-14984128 28 7.8
>03_02_0485 - 8808139-8808618
Length = 159
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 502 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 144
>03_02_0484 + 8805053-8805538
Length = 161
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 502 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 502 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 139
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.039
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 502 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
S QF+RR+ LP+ D V++ L +GVLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 502 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
S QF+RR+ LP+ D V++ + +GVLTVT PK
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>03_02_0478 + 8775892-8776377
Length = 161
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 502 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
S +F+RR+ LP P+ +++ + + GVLTVT PK
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASMEN-GVLTVTVPK 146
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.068
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 502 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
S QF+RR+ LP+ D V++ + +GVLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 282 NRKRNETDRAADFGDESNGASGDGL*NHIQRREVSG-QYRRTTFFTG*NKC 431
+R+RN DR + + +NG S DGL + ++R +++G + RTT + C
Sbjct: 148 SRQRNIEDRLRERDEAANGGSSDGLQDRMERSKIAGVRLNRTTTSSSSEPC 198
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 508 QFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVLALPSTGEKIVPITHTG 660
+F RR+ +P G V ++L DGVLTVT PKV ++V I G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAG 190
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 502 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
S +F RR+ LP+G D V + + +GVLTVT PK
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 178 NQSMHRDRYRMSPYNQFRDVFEPQFYRPWENT 273
++SMHRDRY P +FR E R WEN+
Sbjct: 117 HRSMHRDRYERQPSGRFRQWPE----RQWENS 144
>02_05_0494 + 29486960-29487454
Length = 164
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 505 RQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 606
R + ++ LP+ D ++++ DGVLTVT PK
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPK 138
>05_07_0248 -
28651807-28651908,28652001-28652061,28652164-28652270,
28652369-28652473,28652556-28652642,28652814-28652894,
28653083-28653155,28653243-28653355,28653439-28653532,
28653633-28653688,28653779-28653865,28653975-28654064,
28654178-28654348,28654752-28654871,28654981-28655193
Length = 519
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 143 SARRISTGCRLSTN--RCIVTATECLRTINFATSLNRSFTDPGKI 271
+ RR+ G R + N +C++T+ T++ TS R+F DP ++
Sbjct: 43 AVRRMCLGYRGTKNGAQCVLTSDAGPDTLHVRTSFRRNFADPNEV 87
>05_04_0240 +
19325981-19326260,19327135-19327156,19327361-19327484,
19327721-19327811,19327984-19328073,19328450-19328550,
19328702-19328866
Length = 290
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 258 SVKLRFKDVAKLIVRRHSVAVTMHRLVERRHPVEILRAEEFSI 130
+V+L + + +V H VT+H + E + P+EIL E +I
Sbjct: 176 AVELSKTEETQAVVISHPSLVTVHDMTEVKRPIEILGGERDTI 218
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 62 RTNKKRCQFCHTCTIWRDHFV*WIENSSARR 154
R N K C+ C C DH W+ N R+
Sbjct: 117 RKNSKHCRSCDKCVDGFDHHCRWLNNCVGRK 147
>01_01_0599 - 4448290-4448790
Length = 166
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 508 QFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKV 609
+F+R++ LP D + S + DGVLTVT K+
Sbjct: 118 KFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKL 150
>01_01_0228 + 1940149-1940649
Length = 166
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 511 FIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVL 612
F R+ LP + D V + + G+LTVT PKV+
Sbjct: 104 FFGRFHLPDDAVVDLVRASMDG-GMLTVTVPKVV 136
>08_01_0863 +
8437188-8437337,8437649-8437739,8437913-8438002,
8438099-8438202,8439137-8439277
Length = 191
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 258 SVKLRFKDVAKLIVRRHSVAVTMHRLVERRHPVEILRAEEFSIHQTKWSLQIVH 97
+V++ + + IV H AVT + E + P+EIL A+ ++ + Q VH
Sbjct: 84 AVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVH 137
>04_04_0947 - 29583775-29583931,29584030-29584256
Length = 127
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 223 DCTETFCSGHDASIG*KATSCRNPAGRRVLDPSDE 119
D E SGH AS A S R P GR DP D+
Sbjct: 11 DDIEAGFSGHSASPVKPAASPRRPGGRLFCDPCDD 45
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 192 MHRLVERRHPVEILRAEEFSIHQTKWSL-QIVHVWQN*HR 76
+H+ +RH +E L ++ S HQ + Q H WQ HR
Sbjct: 737 LHKYANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQQKHR 776
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 611 STLGAVTVRTPSEDSFDSTVSGK 543
S LG VTV TP DS +S +GK
Sbjct: 826 SLLGEVTVSTPKPDSIESIPTGK 848
>03_03_0165 + 14982725-14984128
Length = 467
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 490 HGYVSRQFIRRYALP-QGCLPDTVESKLSSDGVLTVTAPKVLALPSTGEKIVPITHTG 660
H Y R+ + Y+L GC + L+ + + T P+ LAL + E I P +TG
Sbjct: 151 HRYGMREDVAAYSLAGMGCSAGLISLDLARNTL--ATRPRALALVVSTESIAPNWYTG 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,841,902
Number of Sequences: 37544
Number of extensions: 330143
Number of successful extensions: 923
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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