Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h01
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.5  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   5.5  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   5.5  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    25   7.3  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   7.3  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   7.3  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 630 KLANYYLELIKITNILFIMNFPWLFRPELIPRVWFFIYFWLL*CNSS 490
           K  N+ +  ++   I+F+ +F W + P+LI      +  W+  C  S
Sbjct: 262 KACNWTISRLRYFFIVFVASFIWYWFPDLIFPALSSLGAWISWCKPS 308


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 RISQLSRPVEALDHSTFQ*FQILCIFVPKL 383
           R S +S P  A   ++ Q   +LC+F+P L
Sbjct: 638 RSSSMSLPPSAGSSTSLQRISLLCVFIPLL 667


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 178 LFASVLNFLDFDLRIQHWLSNSILSFVERMVLS**NSFLYQEKVVSKIVLIFVTVLSLH 2
           LF   LNF DF      ++   +LSF+   VL   + +      V ++  I  T  SLH
Sbjct: 30  LFTGKLNFADFYYNTNPFVVGLLLSFILGNVLWGVSVWTKNTSQVDRLWPILPTAFSLH 88


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 337 QLYSPTDTCAYISLGKVLAQRCIEFGITEMYCDLEP 444
           QLY+P   C   S    L      FG  EMYCD +P
Sbjct: 474 QLYNPVVGCYLSSSSSSLPSW--GFGQIEMYCDPDP 507


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 460 AEKFLEEVVKGGITLQ-EPEVYKKPNPWDQFRPEKPWEVHDE 582
           AEK      K GI    EPE+YKK + W +   ++ W   D+
Sbjct: 184 AEKHEILFSKFGINYNFEPEIYKKGSIWIREPIDQEWHQQDK 225


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = -2

Query: 642  LTRLKLANYYLELIKITNILFIMNFPWLFRPELIPRVWFFIYFWLL*CNSSLHHFL*EFL 463
            L RL    YY+  + +  + F        +P LI  V    +FWLL   +    F+    
Sbjct: 1062 LPRLNDVEYYINNVFLFLLSFYSLIYGAEKPYLIHNVVGLYFFWLLFLYAKNGFFVQNIS 1121

Query: 462  SFPALLRL*ITVHFSNSKFYASL 394
             +P + R+    +F   KF  S+
Sbjct: 1122 KWPIIPRM---KYFIKHKFLRSI 1141


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 120 DSQC*IRKSKSKKFRTDANSQKTGWISLRET 212
           D +C + K   K F ++ + +KT WI    T
Sbjct: 187 DLRCRVNKKAKKLFGSEPSIEKTNWIEAEFT 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,705
Number of Sequences: 5004
Number of extensions: 58270
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)