Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h01
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16560-1|AAA27999.1|  170|Caenorhabditis elegans Hypothetical pr...    81   7e-16
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    29   2.2  
Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68760-14|CAA92998.2|  908|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z68748-13|CAA92957.2|  908|Caenorhabditis elegans Hypothetical p...    29   3.8  
AF016657-8|AAB93650.2|  275|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z70682-7|CAA94585.2|  531|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical ...    27   8.9  

>L16560-1|AAA27999.1|  170|Caenorhabditis elegans Hypothetical
           protein D2007.4 protein.
          Length = 170

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
 Frame = +1

Query: 136 FVNRNPRNLERMRIARKPDGYHLEKP--GRKYWHKLVLTPGNRSIIAKVIHFLNGPVVEV 309
           FVNRNPRN E M       GY  EK    R Y +K+ L  G      +++H+ +G V+  
Sbjct: 9   FVNRNPRNNELMGRQAPNTGYQFEKDRAARSYIYKVELVEGKSHREGRLVHYQDGVVISA 68

Query: 310 KTSEWALQKQLYSPTDTCAYISLGKVLAQRCIEFGITEMYCDLEPQQGGKAE---KFLEE 480
            T E ++  QLYS TDT A +++G+VLA RC++ GI         +   K++    F + 
Sbjct: 69  STKEPSIASQLYSKTDTSAALNIGRVLALRCLQSGIHFAMPGATKEAIEKSQHQTHFFKA 128

Query: 481 VVKGGITLQEP 513
           + + G+TL+EP
Sbjct: 129 LEEEGLTLKEP 139


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +1

Query: 46  LLFLDTKMNFIRTVPFVPQMTRLSS-------TANVEFVNRNPRNLERMRIARKPDGYHL 204
           L ++++K+   RT  F PQ +  SS       T  +    ++   LE++ I   P G   
Sbjct: 128 LSYVESKLEIFRTSSFNPQWSSFSSLKYLLEGTCQLSSTEKSENGLEKIYIIDFPTGNQY 187

Query: 205 EKPGRKYW 228
            K  +K W
Sbjct: 188 TKTNKKIW 195


>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 238 LICANISFQVSLSDIHPVFWLFASVLNFLDFDLRIQHWLSNSILSFVERMVLS 80
           +I AN+S  + + D  PVFW+F S   F    + I  W S+ +  + +  V S
Sbjct: 259 IIWANLSTALEILDFTPVFWIFDSHSLFHLATIPIPIWWSDFLALYYDLDVAS 311


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 481 VVKGGITLQEPEVYKKPNPWDQFRPE-KP 564
           ++KGG+   EP++  KPNP  + +P+ KP
Sbjct: 145 ILKGGVLKNEPKLKSKPNPKPEPKPKPKP 173


>Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical
           protein M176.8 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 361 CAYISLGKVLAQRCIEFGITEMYCDLEP 444
           CA + +  ++    I FGITE+YC L P
Sbjct: 34  CAVVIIAVLMICGLIAFGITEIYCRLFP 61


>Z68760-14|CAA92998.2|  908|Caenorhabditis elegans Hypothetical
           protein F36H1.6 protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 442 PQQGGKAEKFLEEVVKGGITLQEPEVYKKPNP 537
           P + G+ +    E  K G+ +Q+P  ++K NP
Sbjct: 33  PDKNGREDLLAVEAAKDGVPVQKPSRWRKKNP 64


>Z68748-13|CAA92957.2|  908|Caenorhabditis elegans Hypothetical
           protein F36H1.6 protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 442 PQQGGKAEKFLEEVVKGGITLQEPEVYKKPNP 537
           P + G+ +    E  K G+ +Q+P  ++K NP
Sbjct: 33  PDKNGREDLLAVEAAKDGVPVQKPSRWRKKNP 64


>AF016657-8|AAB93650.2|  275|Caenorhabditis elegans Hypothetical
           protein C16C4.3 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 191 SGFLAIRIRSKFLGFRFTNSTLAVELNLVICGTNGTVL 78
           +GFL + +R +       N T+AVEL L +   NG +L
Sbjct: 178 NGFLGLFLRCEKEESNTRNWTIAVELTLTLVSANGRIL 215


>Z70682-7|CAA94585.2|  531|Caenorhabditis elegans Hypothetical
           protein F08G5.5 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 286 LNGPVVEVKTSEWALQKQLYSPTDTCAYISLGKV-LAQRCIEFGITEMYCDLEPQQGGKA 462
           + G    VK+  WA QK+L +   T A+I+ G +  A+  +  G+  ++      Q   A
Sbjct: 366 VTGAKCHVKSVNWAPQKELLAHEKTVAFITHGGLKSAKEGVCSGVPMLFLPFYGDQPRNA 425

Query: 463 EKFL 474
            +F+
Sbjct: 426 HRFV 429


>AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical
           protein H23L24.3b protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 163 ERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSI 264
           +++ I   PDG   ++P   YWH +VL+  N+ +
Sbjct: 144 KKIGIIEYPDGRSDKQPCDVYWHNVVLSDMNKIV 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,188
Number of Sequences: 27780
Number of extensions: 326889
Number of successful extensions: 891
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)