Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6h01
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    29   0.039
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.36 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.5  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 655 FNPTINKAKTSKLLSRTH*NNKYLIHHELP 566
           +   IN  K +++++ TH N KYL  H+LP
Sbjct: 42  YEEIINGKKLTEIINETHENVKYLPGHKLP 71


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 567 PWLFRPELIPRVWFFIYFWLL*CNSSLH 484
           P+L  P+ IP     ++ WL  CNS L+
Sbjct: 396 PFLKNPDAIPAFLSSLFLWLGYCNSLLN 423


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 658 SFNPTINKAKTSKLLSRTH*NNKYLIHHEL 569
           +F+ TIN  K  K   R     KY  HH+L
Sbjct: 501 NFHITINADKPMKAAIRIFIGPKYDSHHKL 530


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 658 SFNPTINKAKTSKLLSRTH*NNKYLIHHEL 569
           +F+ TIN  K  K   R     KY  HH+L
Sbjct: 501 NFHITINADKPMKAAIRIFIGPKYDSHHKL 530


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 138 RKSKSKKFRTDANSQKTGWISLRETWKE 221
           R S+S++    +   +  +   RETWKE
Sbjct: 38  RYSRSREREQKSYKNENSYRKYRETWKE 65


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 138 RKSKSKKFRTDANSQKTGWISLRETWKE 221
           R S+S++    +   +  +   RETWKE
Sbjct: 38  RYSRSREREQKSYKNENSYRKYRETWKE 65


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 138 RKSKSKKFRTDANSQKTGWISLRETWKE 221
           R S+S++    +   +  +   RETWKE
Sbjct: 38  RYSRSREREQKSYKNENSYRKYRETWKE 65


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 138 RKSKSKKFRTDANSQKTGWISLRETWKE 221
           R S+S++    +   +  +   RETWKE
Sbjct: 38  RYSRSREREQKSYKNENSYRKYRETWKE 65


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 349 PTDTCAYISLGKVLAQRCIEFGITEMYCDLEPQQG 453
           P+D  + I   K LA R I+F    ++C++E  +G
Sbjct: 284 PSDKLSKIQTLK-LATRYIDFLFQVLHCNMENTEG 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,198
Number of Sequences: 438
Number of extensions: 4131
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)