Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6g23
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 40 0.001
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 38 0.006
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 37 0.014
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 33 0.13
11_01_0098 - 724413-724449,725200-725690 30 1.6
06_01_0031 - 305457-305663,306248-306523,306824-307609 30 1.6
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 29 2.1
04_04_0765 - 27910189-27912393,27912521-27912598 29 3.7
02_05_0134 + 26161904-26162776 29 3.7
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 29 3.7
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 28 4.9
08_01_0686 + 6049563-6050900 28 6.5
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 28 6.5
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939... 27 8.5
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 27 8.5
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 297 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEH-CGGI 470
LT+E+K LQ R+F ++E+ P+ ++ + E+P+ ++ K +G+ G I + C G+
Sbjct: 61 LTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAGGTIKGYGCPGL 119
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 297 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNG 443
LTDE+K L++ R + EI P+ +Y + E+P+ + K +GL G
Sbjct: 47 LTDEEKTLRKKVRGIMEREIAPIMTEYWEKAEFPFHAIPKLATLGLAGG 95
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -2
Query: 565 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 389
P P P P+ S ++ +S +P + P P S P PTS A+ T GYS
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1726
Query: 388 PVL-SY*PAT 362
P SY P +
Sbjct: 1727 PTSPSYSPTS 1736
Score = 34.7 bits (76), Expect = 0.056
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -2
Query: 565 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 389
P P P P+ S ++ +S +P + P P S P PTS A+ T YS
Sbjct: 1604 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYS 1663
Query: 388 PVL-SY*PAT 362
P SY P +
Sbjct: 1664 PTSPSYSPTS 1673
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 565 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 389
P P P P+ S ++ +S +P + P P S P PTS ++ + YS
Sbjct: 1695 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYS 1754
Query: 388 PVLSY*PATGMISSF 344
P +Y P++ +S +
Sbjct: 1755 PSHAYSPSSPRLSPY 1769
Score = 31.1 bits (67), Expect = 0.69
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -2
Query: 565 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 389
P P P P S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 1632 PSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 388 PVL-SY*PAT 362
P SY P +
Sbjct: 1692 PTSPSYSPTS 1701
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 532 PVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 362
P P+ S ++ ++ +P + P P S P PTS ++ T YSP SY P +
Sbjct: 1573 PASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1631
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 532 PVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYSP 386
P P+ S ++ +S +P + P P S P PTS A+ T YSP
Sbjct: 1740 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSP 1789
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 532 PVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 362
P P+ S ++ +S +P + P P S PTS A+ T GYSP SY P++
Sbjct: 1747 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSS 1805
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 520 NASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYSP 386
N S ++ +S +P + P P S P PTS ++ T YSP
Sbjct: 1737 NYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSP 1782
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -2
Query: 565 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 389
P P P P+ S +++ +S +P + P P S P P+S ++ + Y+
Sbjct: 1757 PSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYT 1816
Query: 388 PVLSY*PAT 362
P +Y P++
Sbjct: 1817 PSHAYSPSS 1825
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Frame = -2
Query: 565 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF--------PMPPQCSGMCPFIRPTSQAFF 410
P VP P P S+++ ++S +P + P P S P PTS A+
Sbjct: 1632 PSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYS 1691
Query: 409 TTGHGYSP 386
T Y+P
Sbjct: 1692 PTSPSYNP 1699
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -2
Query: 532 PVHPNAS--SSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYSPVLS 377
P P+ S S + +S +P + P P S P PTS ++ T YSP S
Sbjct: 1724 PTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS 1778
>11_01_0098 - 724413-724449,725200-725690
Length = 175
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 562 KDVPPIAVVMPVHPNASSSATMHSSKTPKFPMPPQC 455
++V P A M +A+ TM +SK P+ P+PP C
Sbjct: 105 REVRPRAQ-MTTQSSAARMTTMLASKAPELPLPPAC 139
>06_01_0031 - 305457-305663,306248-306523,306824-307609
Length = 422
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 496 HSSKTPKFPMPPQCSGMCPFIRP 428
H P FP PP S CPF+ P
Sbjct: 9 HLLDDPFFPFPPPSSSSCPFLSP 31
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 428 WPNERTHSRTL-RGHREFWRLRRVHRSGRTCVWMYWHHDSYWGHVLRT 568
WP+ R + + + HR +W+ R HR + HH S+WG V T
Sbjct: 62 WPSVRMMDQAMVKNHRVYWK-NRSHRLKLNNL-AGEHHQSFWGTVFIT 107
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 586 AIMMGVCPKDVPPIAVVMPVHPNASSSATMHSSKTPKFPMPPQCSGMCPFI 434
A++ VC P+A P P ASS + S P FP P CS P +
Sbjct: 478 AVVSPVCATS--PVAACYP--PTASSLLSGPSGGGPAFPASPLCSRRSPLL 524
>02_05_0134 + 26161904-26162776
Length = 290
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 531 QYIQTQVRPLRCTLRRRQNSLCPRNVLECVRSLGQLPK 418
++ + QVR L T R+ L PR E R LG P+
Sbjct: 67 RFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPR 104
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 375 IDPPQE*FHPS*IYALVPEALSAHRLIRNKS 283
+DPP++ HPS I AL ALS + + KS
Sbjct: 362 VDPPRKGLHPSVICALQKVALSERKAYKAKS 392
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -2
Query: 574 GVCPKDVPPIAVV--MPVHPNASSS-ATMH-SSKTPKFPMPPQCSGMCP-FIRPTSQAFF 410
G+C K VPP+ N S S A +H ++P FP Q G+CP RP + +
Sbjct: 53 GIC-KVVPPLPPPPKKATFSNLSRSFAALHPDDRSPSFPTRHQQVGLCPRRTRPGLKPVW 111
Query: 409 TTGHGYS 389
+ H Y+
Sbjct: 112 RSSHRYT 118
>08_01_0686 + 6049563-6050900
Length = 445
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -3
Query: 375 IDPPQE*FHPS*IYALVPEALSAHRLIRNK 286
IDPP FH S +Y V E LS L NK
Sbjct: 310 IDPPPTVFHQSWLYVSVDERLSLLYLCDNK 339
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -2
Query: 553 PPIAVVMPVHPNASSSATMHSSKTPKFPMPPQCSGMCPFIRPTSQAFFTTGHGYSPVLS 377
P A V+P P + A++ S +P +PP +G P + P S + P+ S
Sbjct: 30 PSAAAVLPARPPSPPRASIPVSSSPPL-LPPPVAGSKPQLPPFSSSSSVASSSSPPLPS 87
>07_03_1760 -
29289997-29290377,29290539-29290755,29291152-29293953,
29294134-29294178,29294274-29294358,29294791-29294875,
29296429-29296530,29296747-29296851,29296940-29297029,
29297163-29297258
Length = 1335
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -2
Query: 568 CPKDVPPIAVVMPVHPNASSSATMHSSKTPKFPMPPQCSGMCP 440
C K V MP P S+ M S K PP+ +G CP
Sbjct: 850 CEKVSQTADVEMPDAPIVDSTGAMFSKSGFKEVFPPENAGSCP 892
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 201 VRATRPIYRKLXXXXXXXXXXKPIPTTGFCFELTDEQKALQELA 332
VR TRP YR L +P GF F + AL +A
Sbjct: 294 VRGTRPDYRSLVPSSILNHTICTVPVHGFGFGADHDSDALHSIA 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,411
Number of Sequences: 37544
Number of extensions: 322391
Number of successful extensions: 964
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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