Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6g18
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    28   0.55 
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    26   1.7  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   2.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.1  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    24   6.8  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    24   9.0  

>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 185 IRSKIYRQIVFITSRKYLDPRKNNYEETLRSILKYFSI 72
           +   + R I  +  R  LDP+++   E  +S+ KYF +
Sbjct: 123 LTESVKRDIQLLKMRNALDPKRHYRRENTKSMPKYFQV 160


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 299 LVHITYEYTLYAMYLYISILS 237
           +VHI+YEY   A +L I+I++
Sbjct: 414 IVHISYEYNSSAFFLRIAIIT 434


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 174 NLPSNRVYHKSEVPRS*KK*L*RNFKIYPQIFFYTPRNHNS 52
           NL ++R Y +++  +  KK     F+ YP  F +TP ++NS
Sbjct: 510 NLSNSRRYSRNKFHK--KKQSSGPFQYYPDAFSFTPTDNNS 548


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 329 SSYINKKFF*LVHITYEYTLYAMYLYISILSF 234
           S+ +N   F  + I+   T Y MYL +SI+SF
Sbjct: 654 SALLNSNVFINIVISLSST-YGMYLVVSIISF 684


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 215 KLKIHSWIEIIRSKIYRQIV 156
           K ++HSWIE I+  I   IV
Sbjct: 599 KAEMHSWIEAIQYSISESIV 618


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 238 DNIDIYKYIAYKVYSYVM 291
           +N+ +Y +I  K+Y YV+
Sbjct: 47  NNVQLYGFIRLKIYKYVV 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,242,545
Number of Sequences: 5004
Number of extensions: 22063
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)