Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6g18
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1621 + 34842062-34842066,34842270-34842921                       27   3.6  
01_01_0549 - 4051257-4051709,4051967-4052075,4053194-4053252,405...    27   6.3  
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    26   8.4  

>04_04_1621 + 34842062-34842066,34842270-34842921
          Length = 218

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 170 YRQIVFITSRKYLDPRKNNYEETL 99
           +RQI  +  RK++D +K NYE+TL
Sbjct: 168 HRQIYIL--RKFIDEKKMNYEQTL 189


>01_01_0549 -
           4051257-4051709,4051967-4052075,4053194-4053252,
           4053339-4053445,4053711-4053867,4054110-4054169,
           4055396-4055524,4056027-4056074,4057148-4057214,
           4057948-4058006
          Length = 415

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 135 VLPTCDKHDLTVNFRSYYFNP*MYLEF 215
           VL  CD  D  V F  YYFN   Y+ F
Sbjct: 127 VLTLCDAGDAVVMFAPYYFN--SYMSF 151


>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 283 TSILYMQCIYIYLYCLFKVKYI 218
           T  L M  + +YLYC  K+KYI
Sbjct: 723 TITLVMISVQLYLYCYRKLKYI 744


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,286,564
Number of Sequences: 37544
Number of extensions: 93642
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)