Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6g18
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical pr...    30   0.62 
Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical p...    30   0.62 
AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.     27   5.8  
AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans hom...    27   5.8  

>Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
 Frame = -2

Query: 299 LVHITYEYTLYAMYLYISILSFQS*IYLKLKIHSWIEIIRSKIYRQIVFITSRKYLDPR- 123
           LVHI++  T   M+L IS++ F S    K  +  ++ ++        +F  + ++LDP  
Sbjct: 60  LVHISFMITTCVMFLVISLVYF-SIFTKKCALLVFLTLLYFAAASLKLFQIANQHLDPGF 118

Query: 122 KNNYEETLRSILKY--FSILQETIIVISATNN 33
           + +++ T     +Y   S+  ++IIV ++  N
Sbjct: 119 RRHFKSTFTKYSEYGLLSLFYDSIIVFTSIIN 150


>Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
 Frame = -2

Query: 299 LVHITYEYTLYAMYLYISILSFQS*IYLKLKIHSWIEIIRSKIYRQIVFITSRKYLDPR- 123
           LVHI++  T   M+L IS++ F S    K  +  ++ ++        +F  + ++LDP  
Sbjct: 60  LVHISFMITTCVMFLVISLVYF-SIFTKKCALLVFLTLLYFAAASLKLFQIANQHLDPGF 118

Query: 122 KNNYEETLRSILKY--FSILQETIIVISATNN 33
           + +++ T     +Y   S+  ++IIV ++  N
Sbjct: 119 RRHFKSTFTKYSEYGLLSLFYDSIIVFTSIIN 150


>AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17
          protein.
          Length = 237

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 81 FFYTPRNHNSYISY 40
          FFYTP++HN Y  Y
Sbjct: 33 FFYTPQSHNIYHQY 46


>AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans
          homeobox protein 17 protein.
          Length = 237

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 81 FFYTPRNHNSYISY 40
          FFYTP++HN Y  Y
Sbjct: 33 FFYTPQSHNIYHQY 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,458,349
Number of Sequences: 27780
Number of extensions: 113098
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)