Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6g08
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.2  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   6.8  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   6.8  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    25   9.0  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   9.0  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   9.0  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -2

Query: 608 IVAVIKIDSASLFQVHTLYRQT*NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFF 444
           +VA+I+  +A    + T + Q  + +      K  F C  SKY+ YLF +   F+
Sbjct: 129 LVAIIQSTTAIQAGILTAWYQLYSCKKEESSNK--FLCPLSKYLIYLFLSIHLFY 181


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -3

Query: 151 HTSRSHLDCYDNTGLTIDDTT--FNKYVTNLSSYTSSYASANI 29
           +TS +HL    N GLT + +T  F KY TN SS  S Y+++++
Sbjct: 281 NTSPNHLASVPNRGLTSNSSTGSFTKY-TNGSS-NSLYSNSSM 321


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 157 AVHTSRSHLDCYDNTGLTIDDTTFNKYVTNLSSYTSSYASAN 32
           A+H  R      D+T  T  + T     T+ SS  SS ASA+
Sbjct: 492 ALHPLRRETSILDSTNTTSTNATNTTTTTSSSSTASSSASAS 533


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 507 RVLLSFLEVRILFVSKLFSIFLSMFRRR 424
           R  LSFL +  LF+S L  IF + F+ +
Sbjct: 87  RAFLSFLSICFLFISFLNFIFSTRFQNK 114


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 491 NDSRTLPFYVHDVHVYFKSGGTK-YAPGK 574
           ND  +  FYV D H YF  GG   +AP K
Sbjct: 236 NDHESEGFYVVDHHSYFCFGGELCHAPPK 264


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 482 TSRNDSRTLPFYVHDVHVYFKSGGTKYAPG 571
           T R  S  LP Y H  H+Y + G   Y  G
Sbjct: 70  TVRGSSNVLPRYSHASHLYAEGGQEIYIFG 99


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 486 RETTVEPCLFMYMMCTS 536
           RET + P  ++Y++CTS
Sbjct: 194 RETNMPPTWYLYVLCTS 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,691
Number of Sequences: 5004
Number of extensions: 40519
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)