Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6g07
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    47   3e-06
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    38   0.002
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    33   0.033
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   1.7  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    27   2.9  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   3.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.7  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   6.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.8  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   8.8  

>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
 Frame = +1

Query: 307 LSVTIAQAKLVKNYGLT-RMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLP-PGV 480
           L V I +AK + N  L  +  PY   RVG  +  T TD   G+ P WN V+   +P    
Sbjct: 9   LVVRIWKAKNLPNKALVGKQSPYCVCRVGEVVKRTQTDKRSGQEPSWNAVLEFNIPSESY 68

Query: 481 NTIYLEIFDECSFTMDELIAWTHITIPQAVLNGETHEDWYPLNGK 615
           + + + +F E       LI  T ++  +A +  E   +WY L  +
Sbjct: 69  HIMKITVFHEGFRKHPHLIGDTVLSFEKA-MKEELQSEWYELKNE 112


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/93 (24%), Positives = 38/93 (40%)
 Frame = +1

Query: 304  RLSVTIAQAKLVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVN 483
            RLSV  A   +       + DPY RV VG+ +            P WN++++  +     
Sbjct: 760  RLSVIKANDLVNVELPTRKSDPYARVIVGNSVVARTVYTPNNLNPIWNEILYVPIMADTK 819

Query: 484  TIYLEIFDECSFTMDELIAWTHITIPQAVLNGE 582
            TI LE  D      D  + +  I + + + N +
Sbjct: 820  TIDLEAMDYEESGNDRSLGYASINVQKYIRNAK 852


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
 Frame = +1

Query: 262 YGAAVPQSGPPMT-----ARLSVTIAQAKLVKNYGLTRMDPYVRVRVGHCIYETHTDPSG 426
           + A VP SG  +T       L  T+ Q K + N    R   Y ++ + +    T      
Sbjct: 553 FHAVVPDSGEEITKVDGPGVLQFTVHQCKELSNDPSKRPTAYAKLIINNKEVYTTRKIKK 612

Query: 427 GKTPRWNKVIHCLLPPGVN-TIYLEIFDECSFTMDELIAWTHITIPQAVLNGETHEDWYP 603
              P W +    LLP G N T+ ++IF E S   +      ++++       +T   W+P
Sbjct: 613 NNNPSWEESFGTLLPEGKNATLGVQIFTEES---EHPFGTANVSLQDLFAATKTGLLWFP 669

Query: 604 L 606
           L
Sbjct: 670 L 670


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 420 RISVSLVYTMSNTHTNIRVHTS*SIIFNKLSLSYSDT*SR 301
           R + S ++ M      I+VH + S+I +K + SY+D  +R
Sbjct: 586 RFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQAR 625


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 609 IQGVPVFVSFTIQNGLRYSDVGPSNQLVHCK*ALVKDLQIYCIHTGW 469
           I   PV + + +QN L+ S V  + +L   + ++     ++ + TGW
Sbjct: 13  INSAPVILGYALQNSLQTSSVIVTGRLGPSELSVAAFAYMFAMSTGW 59


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
 Frame = +1

Query: 334 LVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTPRWN----KVIHCLL---PPGVNTIY 492
           L+KN   T +DPY+R+R+    + ++  P     P +N    KV+   L    PG++ ++
Sbjct: 47  LLKNI-YTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVF 105

Query: 493 LEIFDECSFTMDELIAW 543
           +  ++E +F   + + +
Sbjct: 106 VSGWEEYTFVSKQALGF 122


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -3

Query: 390  SNTHTNIRVHTS*SIIFNKLSLSYSDT*SRCHWRATLWYCSTI 262
            S + T+ +V++  +I  N++S + S        ++ LWYC+ +
Sbjct: 1267 SISSTSFKVYSQLTIFANRVSFNNSTAIPFFSTKSVLWYCNRL 1309


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 283 SGPPMTARLSVTIAQAKLVKNYGLTRMDPYVRV 381
           +G P T+ LSVT      V    L R DP+ ++
Sbjct: 347 TGQPWTSTLSVTQTDLASVLEICLQRSDPFTKI 379


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 442 WNKVIHCLLPPGVNTIYLEIFD 507
           W KV+ C++  G NT++  + D
Sbjct: 289 WEKVLVCVVIDGRNTVHQNVLD 310


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 85  IYQLYAPITMTSTMP 129
           +YQLY P+++T+ +P
Sbjct: 554 LYQLYGPVSVTAVLP 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,187
Number of Sequences: 5004
Number of extensions: 50206
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)