Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6g07
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0566 - 30017031-30017309,30018077-30018172,30018261-300183... 42 4e-04
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 41 7e-04
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759... 41 0.001
01_01_0186 + 1598046-1598234,1599215-1599277,1599359-1599448,159... 41 0.001
07_03_0498 + 18786732-18786869,18788048-18788143,18788301-18788588 35 0.060
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376... 34 0.079
01_04_0020 + 15142402-15143421 34 0.079
07_03_1635 + 28286133-28286831 34 0.10
07_03_1636 + 28290642-28291574 33 0.14
05_04_0073 + 17669311-17671635 33 0.24
07_03_0394 - 17633753-17636788 31 0.97
04_04_0601 + 26532487-26532553,26532732-26532797,26533440-265335... 31 0.97
02_01_0739 + 5505630-5505654,5505965-5506049,5506444-5506519,550... 31 0.97
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 29 2.3
01_06_1377 + 36764461-36765339 29 2.3
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 3.0
09_02_0072 + 3895868-3895999,3897814-3897909,3898484-3898771 28 5.2
02_02_0710 + 13173074-13173187,13173495-13173590,13174624-13174911 28 5.2
07_03_1178 - 24580294-24580727,24581749-24582274 28 6.9
06_03_0752 - 24171847-24174321 28 6.9
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 28 6.9
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 28 6.9
>02_05_0566 -
30017031-30017309,30018077-30018172,30018261-30018377,
30018538-30018667,30018866-30019029,30019480-30019485
Length = 263
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/98 (23%), Positives = 44/98 (44%)
Frame = +1
Query: 265 GAAVPQSGPPMTARLSVTIAQAKLVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTPRW 444
G V L++T+ + + + DPYV + +G +T PS P W
Sbjct: 96 GKHVADDTREFVGELNITVVRGIQLAVRDMLTSDPYVVLTLGEQKAQTTVKPSD-LNPVW 154
Query: 445 NKVIHCLLPPGVNTIYLEIFDECSFTMDELIAWTHITI 558
N+V+ +P + LE++D +F+ D+++ I +
Sbjct: 155 NEVLKISIPRNYGPLKLEVYDHDTFSADDIMGEAEIDL 192
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +1
Query: 355 TRMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNTIYLEIFDECSFTMDEL 534
TR DPYV + + T T GG+ P +++ H L G+ + + +++ + T D+
Sbjct: 25 TRQDPYVCIEYATNKFRTRTCTDGGRNPTFDEKFHIPLIEGLRELTVTVWNSNTLTHDDF 84
Query: 535 IAWTHITIPQAVLNGETHEDW 597
I + + + + G W
Sbjct: 85 IGNGRVQLHKVLTRGYDDASW 105
>01_07_0189 +
41875088-41875149,41875322-41875392,41875809-41875902,
41876285-41876360,41877130-41877293,41877428-41877605,
41877687-41877809,41877895-41877990,41878091-41878372
Length = 381
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +1
Query: 364 DPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNTIYLEIFDECSFTMDELIAW 543
DPYV + +GH +T S P WN+ I +P + + L+++D+ +FT D+ +
Sbjct: 246 DPYVILNLGHQSMKTKVIKSS-LNPVWNERILLSIPDPIPMLKLQVYDKDTFTTDDRMGE 304
Query: 544 THITIPQAVLNGETHE 591
I I V + +E
Sbjct: 305 AEINIQPLVAAAKAYE 320
>01_01_0186 +
1598046-1598234,1599215-1599277,1599359-1599448,
1599968-1600093,1600583-1600726,1600845-1601255,
1601283-1601364,1601403-1601491,1602250-1602471,
1602552-1602827,1603116-1603253,1603772-1604077,
1604203-1604421
Length = 784
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +1
Query: 304 RLSVTIAQAKLVKNYGLT-RMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGV 480
+L V + + K + G + + DPYV+V+ G +Y+T T S P WN G
Sbjct: 442 KLRVAVVEGKALAVNGKSGKCDPYVKVQYGKALYKTKT-LSHTTRPVWNDKFEFDEITGG 500
Query: 481 NTIYLEIFDECSFTMDELIAWTHITIPQAVLNGETHEDWYPL 606
+ ++ + +F DE I + + + +L+G++ E W PL
Sbjct: 501 EYLKIKCYSADTFG-DESIGSARVNL-EGLLDGDSREVWVPL 540
>07_03_0498 + 18786732-18786869,18788048-18788143,18788301-18788588
Length = 173
Score = 34.7 bits (76), Expect = 0.060
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 364 DPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNTIYLEIFDECSFTMDE 531
DPYV + G +T P WN+V+ + + LE+FDE FT D+
Sbjct: 36 DPYVVLSYGPQKVKTSVQKKNSN-PVWNEVLQLAVTNPTKPVKLEVFDEDKFTADD 90
>03_06_0619 -
35136435-35136728,35137155-35137358,35137476-35137646,
35137902-35138050,35138380-35138527,35138614-35138682,
35138767-35139027,35139223-35139417,35139772-35139888,
35140026-35140961
Length = 847
Score = 34.3 bits (75), Expect = 0.079
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 364 DPYVRVRV-GHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNTIYLEIFDECSFTMDELIA 540
DPYV V + G + +T P+ + PRW + + V+ + + D F +LI
Sbjct: 79 DPYVSVCLAGATVAQTRVIPNS-ENPRWEERFRVEVAHAVSRLEFHVKDNDVFGA-QLIG 136
Query: 541 WTHITIPQAVLNGETHEDWYPLNG 612
+ + + +L+G E W+P++G
Sbjct: 137 VASLPVDR-ILSGAPAEGWFPIDG 159
>01_04_0020 + 15142402-15143421
Length = 339
Score = 34.3 bits (75), Expect = 0.079
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +1
Query: 289 PPMTARL-SVTIAQAKLVKNYGL-TRMDPYVRVRVGHC-----IYETHTDPSGGKTPRWN 447
P M RL +T+ A +K L +RM Y + ++ TH D +GG P WN
Sbjct: 41 PAMAYRLLELTLVSASDLKKVTLFSRMHVYAVASISGSNVPMPMHGTHADRNGGSNPAWN 100
Query: 448 KVIHCLLPPGVNT 486
V+H +P +T
Sbjct: 101 TVLHFPVPARFDT 113
>07_03_1635 + 28286133-28286831
Length = 232
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 307 LSVTIAQAKLVKNYGL-TRMDPYVRVRV-GHCIYETHTDPS--GGKTPRWNKVIHCLLPP 474
L VT+ A+ +K L T M+ Y V V G+ + T P GG+ P WN +H +P
Sbjct: 6 LEVTLISARNLKKVNLITPMEVYAVVSVSGNPLARQCTLPDRHGGRNPTWNATLHLAVPA 65
Query: 475 GVNTIYLEI 501
+L +
Sbjct: 66 AAPGAFLHV 74
>07_03_1636 + 28290642-28291574
Length = 310
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 307 LSVTIAQAKLVKNYG-LTRMDPYVRVRV-GHCIYE--THTDPSGGKTPRWNKVIHCLLPP 474
L VT+ A+ +KN ++RM+ Y + G + T DP GG+ P WN + +PP
Sbjct: 6 LEVTLHSARDLKNVNFISRMEVYAVATISGDPLTRQCTPPDPYGGRHPAWNATLRFTVPP 65
>05_04_0073 + 17669311-17671635
Length = 774
Score = 32.7 bits (71), Expect = 0.24
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = +1
Query: 307 LSVTIAQAK-LVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTPRWNK-VIHCLLPPGV 480
L V + +A+ L+ N D YV+ +G+ T PS P WN+ ++ P
Sbjct: 203 LRVNVIEAQDLIPNDRTRFPDVYVKAMLGNQALRTRVSPSRTLNPMWNEDLMFVAAEPFE 262
Query: 481 NTIYLEIFDECSFTMDELIAWTHIT---IPQAVLNGETHEDWYPL 606
+ L + D + D+++ T I+ +P+ + + + WY L
Sbjct: 263 EHLILSVEDRIAPGKDDVLGRTIISLQHVPRRLDHKLLNSQWYNL 307
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 364 DPYVRVRVGHCIYETHTDPSGGKTPRWN-KVIHCLLPPGVNTIYLEIFDECSFTMDELIA 540
D +V+VR+GH + +T S + WN +++ P + ++I D + DE+I
Sbjct: 457 DVFVKVRLGHQMLKTRPARSPTRNFMWNEEMMFVAAEPFEEDLIIQIEDRVAQNKDEVIG 516
Query: 541 WTHITI 558
T I +
Sbjct: 517 ETMIPL 522
>04_04_0601 +
26532487-26532553,26532732-26532797,26533440-26533566,
26533861-26533975,26534377-26534436
Length = 144
Score = 30.7 bits (66), Expect = 0.97
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +1
Query: 307 LSVTIAQAKLVKNYG-LTRMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVN 483
L V + AK ++N L MDPY ++ ++ G P WN+ +
Sbjct: 6 LEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSVTHNAT 65
Query: 484 TIYLEIFDECSFTMDELIAWTHITIPQAVLNG 579
+ +++ D S T D+ + I++ G
Sbjct: 66 ELIIKLMDSDSGTDDDFVGEATISLEAIYTEG 97
>02_01_0739 +
5505630-5505654,5505965-5506049,5506444-5506519,
5506694-5506857,5506878-5506935,5507283-5507399,
5507543-5507638,5507905-5508186
Length = 300
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +1
Query: 352 LTRMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNTIYLEIFDECSFTMDE 531
++ DPYV + +G +T + P WN+ + +P + L++FD + D+
Sbjct: 161 MSSSDPYVVLTLGQQKAQTSVIKAN-LNPVWNEELKLSVPQQYGPLKLQVFDHDMLSKDD 219
Query: 532 LIAWTHITIPQAVLN 576
L+ I + Q ++N
Sbjct: 220 LMGEAEIDL-QPMIN 233
>06_03_0723 + 23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 364 DPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNTIYLEIFDECSFTMDELIAW 543
DPYV + +G +T S P WN+V+ +P + L+++D + D+++
Sbjct: 987 DPYVVLTLGQQKAKTKVIKSN-LNPVWNEVLTLSVPQKYGPLKLQVYDHDVLSRDDIMGE 1045
Query: 544 THITI 558
+ +
Sbjct: 1046 AEVDL 1050
>01_06_1377 + 36764461-36765339
Length = 292
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +1
Query: 277 PQSGPPMTARLSVTIAQAKLVKNYGLTRMD--PYVRVRVGHCIYE-THTDPSGGKTPRWN 447
P + P L VT+ K +KN R D YV + T D GG P WN
Sbjct: 5 PPAAPLKAIDLEVTVVSGKHLKNVNWRRGDLRAYVVAYLDPSRRAATRPDDVGGCKPAWN 64
Query: 448 KVIHCLLPP 474
+ + LPP
Sbjct: 65 ERVVLPLPP 73
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 220 DSDYEXXXXXXXXXYGAAVPQSGPPMTARLSVTIAQAKLVKNYGLTRMDPYVRV 381
DSD E G A+ + + AR IAQ ++KNY R++ ++++
Sbjct: 1270 DSDEEDEPKREYTAAGLALKEKYEKLRARQKERIAQRHVIKNYADDRLEEFMKL 1323
>09_02_0072 + 3895868-3895999,3897814-3897909,3898484-3898771
Length = 171
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = +1
Query: 307 LSVTIAQAKLVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNT 486
L V +A + T DPYV VR+ +T S P WN+ + +
Sbjct: 15 LKVVVASGTNLAVRDFTSSDPYVVVRLAAMNKKTKVINSC-LNPVWNEEMSFSIEEPAGV 73
Query: 487 IYLEIFDECSFTMDE 531
I E+FD F D+
Sbjct: 74 IKFEVFDWDRFKYDD 88
>02_02_0710 + 13173074-13173187,13173495-13173590,13174624-13174911
Length = 165
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 352 LTRMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNTIYLEIFDECSFTMDE 531
L DPYV VR+G +T P WN + + + LE++D+ +F D
Sbjct: 24 LRSSDPYVIVRMGKQKLKTRVIKKT-TNPEWNDELTLSIEDPAVPVRLEVYDKDTFIDDA 82
Query: 532 L 534
+
Sbjct: 83 M 83
>07_03_1178 - 24580294-24580727,24581749-24582274
Length = 319
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 100 APITMTSTMPNDTNEERRRR 159
AP+ TS++P +T EER RR
Sbjct: 90 APLMRTSSLPTETEEERWRR 109
>06_03_0752 - 24171847-24174321
Length = 824
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 307 LSVTIAQAKLVKNYGLTRM-DPYVRVRVGHCIYETHTDPSGGKTPRWNK-VIHCLLPPGV 480
L V + +A+ V+ R + +V+ +VG+ I +T + PRWN+ ++ + P
Sbjct: 238 LRVNVIEAQDVQPQARGRAPEVFVKAQVGNQILKTSVVAAPTLNPRWNEDLVFVVAEPFE 297
Query: 481 NTIYLEIFDECSFTMDELI 537
+ L + D + D+L+
Sbjct: 298 EQLLLTVEDRVTPRKDDLL 316
>05_04_0256 - 19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 4 SVFRINYADH*ISNNILFKYLILNKALIYQLYAPITMTSTMPNDTNEERRRRVLLGPLPA 183
+ F +NY H + +I NK Y LYA + + + +D + + L PLP
Sbjct: 1098 ATFAVNYMGHPFNQSITE-----NKPFKYALYAAVAFFTVITSDMFRDLNDYMKLEPLPE 1152
Query: 184 G 186
G
Sbjct: 1153 G 1153
>04_04_1636 +
34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 307 LSVTIAQAKLVKNYGLT-RMDPYVRVRVGHCIYET-HTDPSGGKTPRWNKV 453
L V + +A+ + + +T +DPYV VRVG+ T H + K P WN V
Sbjct: 276 LFVRVVKARDLPDMDVTGSLDPYVEVRVGNYRGITRHFEKQ--KNPEWNAV 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,220,374
Number of Sequences: 37544
Number of extensions: 328964
Number of successful extensions: 701
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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