Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6g02
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 81 1e-16
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 28 1.1
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 2.6
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 4.5
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 26 5.9
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 26 5.9
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 7.8
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 7.8
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 81.0 bits (191), Expect = 1e-16
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 1/183 (0%)
Frame = +1
Query: 142 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 321
LSD VQ ++ M++FI+Q F +EK ++V++Q I
Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62
Query: 322 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 501
I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ
Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122
Query: 502 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYXNKIKK-DVVLKVDTENFLSPDTCGGI 678
A+ L EP + RQ D +V++ + KA + +K D L +T++FL+ GG+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGV 182
Query: 679 ELV 687
LV
Sbjct: 183 VLV 185
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 51 TSFPEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 182
T+ P+ V NFL+L RP+ VL + +S + +E T++A D
Sbjct: 233 TATPDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 400 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 525
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 4.5
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +1
Query: 418 LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 570
++EA K KD K L +L T+ + + +E T+TI V DK E
Sbjct: 745 VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804
Query: 571 SLLGKAQQDYXNKIKKDVVLKVDTENFLSPDTC 669
+ LGK D N + DV+ V E + D C
Sbjct: 805 NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 534 HPRPSNRQGSGGVPARKSSTRLXE*DQEGRCVESRH*ELFVARHLWWYRA 683
H RP+N P+R ST E + EG+ + + FV+ W A
Sbjct: 306 HIRPNNEVAPSSAPSRAPSTTSVESNTEGKESDIQTGSSFVSYFKEWRHA 355
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -1
Query: 118 NTTNTKNGRYRARKLMTGSGKEVYAYQTCFFIEQSYDL 5
N N G YR L TG G V+ F E DL
Sbjct: 259 NKINNSEGMYREWNLGTGKGSSVFDIYHAFCKEVGKDL 296
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 531 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 355
+S F +EESL K + F + + S ++ I+ I Y I THF S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 412 YVRDLHALSVPSDEL 368
+V DLHAL+VP D L
Sbjct: 56 FVADLHALTVPQDPL 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,720
Number of Sequences: 5004
Number of extensions: 43785
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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