Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6g01
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 29 0.54
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 29 0.54
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 0.95
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 28 0.95
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 26 3.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 5.1
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 25 6.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.7
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 6.7
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 25 8.8
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 499 LSEMNAVI--GSAMKTPALWMVPTKVLFHSSQARS 401
LSE N+ I GS LW +P KVL ++S+ RS
Sbjct: 445 LSEDNSYIISGSDTNEVVLWHIPNKVLINASRKRS 479
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 29.1 bits (62), Expect = 0.54
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 319 PQPPP-TGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTLHLYCT 185
PQPPP G SRS+R P + Q SG TS G + T
Sbjct: 1320 PQPPPFIGESRSNRKPRPTKRQREIMEQVESGKLTSAEGAAAIAAT 1365
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 28.3 bits (60), Expect = 0.95
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 95 SLPSYDISFDTDIHTVFGHLFRAVYFRDRCS 187
S PSYD+SF+ H VF ++ R + CS
Sbjct: 22 SFPSYDLSFNETEHGVFCYVSRPLTKERSCS 52
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 319 PQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGT 203
PQP G S PP + Q + S G ++ GT
Sbjct: 16 PQPQEQGSDNSSEPPTTSNVNNTQSTGRGSSGTSTEHGT 54
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 292 RSHRPPDSGRAQTPQKSVSNSGGD 221
R H+ P SG + P + S++GGD
Sbjct: 152 RKHKIPSSGSNRVPVQEKSSTGGD 175
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 328 LPGPQPPPTGRSRSHRPPDSGRAQTPQKSVSNS 230
LP P PTG S P DSG +P VS S
Sbjct: 283 LPNAYPHPTGISLPFYPFDSGIPVSPNIPVSPS 315
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 322 GPQPPPTGRSRSHRPPDSGRAQTPQKSVSNS 230
G PP + + + PP++ R P +S NS
Sbjct: 40 GALPPYSDHALVNNPPNTHRENNPSRSTDNS 70
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 331 KLPGPQPPPTGRSRSHRPPDSGRAQT 254
K P P PPP+ R+R P +G + +
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNS 334
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 287 RPAPTCWRWLWPRQLSCKRDLDMRLLG 367
RP+ + W WL Q + +LD+ L G
Sbjct: 866 RPSKSLWNWLLGEQSTSAEELDILLGG 892
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 274 DSGRAQTPQ--KSVSNSGGDTSHSGTLHL-YC 188
DS Q P S++ +G + H G LH+ YC
Sbjct: 231 DSSLCQPPNFVTSINKAGSSSDHGGELHVTYC 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,889
Number of Sequences: 5004
Number of extensions: 57913
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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