Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6f23
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   1.6  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    27   1.6  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   5.0  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   5.0  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   5.0  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   6.7  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   6.7  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    24   8.8  

>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 215 WKGWPPLSQISQSWAPMIGALP-SVHRVGLWHREN 114
           W G P L  +   WA  +GA    ++  GLW+ +N
Sbjct: 77  WAGGPILKYLGPRWALALGATGYPIYIGGLWYFDN 111


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 140 RVGLWHRENFVPGRWNSAATLVGSPSVCLSSRAKV 36
           R+G +HRE+FV G  N + T +    + +  + +V
Sbjct: 102 RMGEFHRESFVEGALNLSTTSLDQLKLAIKEKVQV 136


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 160 PIIGAQLCEICDKGGQPFQAWPTQTHTHNVRGAERQ 267
           P    +LCEI      P + W    H + +RG   Q
Sbjct: 34  PSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQ 69


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = -2

Query: 239 VWVWVGQAWKGW--PPLSQ 189
           +W W+   WK    PPLSQ
Sbjct: 687 IWTWISAFWKAKAPPPLSQ 705


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 177 LGPDDWGSAFCPSGWTVASRELCSGEM 97
           L P D+     P+ W + SR   SGE+
Sbjct: 364 LAPGDYHRFHSPADWVIESRRHFSGEL 390


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 75  W*SICLFVFSCKSSRA 28
           W SIC F++S   SRA
Sbjct: 341 WQSICFFIYSAVGSRA 356


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 173 APMIGALPSVHRVGLWHRE 117
           A M+ A+ +VH++G  HR+
Sbjct: 267 AEMVAAISAVHKLGYMHRD 285


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -2

Query: 314 VYYLNC*EIKFSKSPFCLSAPLTLWVWVWVGQ-AWKGWPPLSQISQSWAPMIGAL---PS 147
           +++L C  +  S +  C + P +  ++      A KGW PL+     W+  IG +   PS
Sbjct: 108 MFFLIC--VSMSMAEICSAMPTSGGLYYAAAVFAPKGWGPLASWITGWSNYIGNIIGQPS 165

Query: 146 VH 141
           V+
Sbjct: 166 VN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,848
Number of Sequences: 5004
Number of extensions: 39672
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)