Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6f17
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   5.2  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   5.2  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.0  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 419 LQQSDTIYNIYTVNPTDTTPHN 354
           +QQ D I +I  VN TDTT  N
Sbjct: 734 IQQFDIILDILLVNRTDTTLQN 755


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 201 QREFGRRPVIPPTRNRRRFLRLQSSFCSYQSRARPRV*NVEERA 332
           Q++   RPV+P T   R    LQSS    QS   P   ++EERA
Sbjct: 503 QKKIKNRPVLPRTAGIRTLDELQSSL---QSAGLPSD-SIEERA 542


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 3   KQTITTKRCRQHVEYLLLNCFHPKRRNTSYC 95
           K  ITTK  RQ V+  L NC   +  N + C
Sbjct: 114 KNQITTKSARQFVKSHLGNCDLEQAENETDC 144


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 174 IYGIKFDESQREFGRRPVIPPTRNRRRF 257
           ++ +K  E++  FG R + P   NRR +
Sbjct: 908 MHSVKSFETESSFGNRSLSPKQENRRTY 935


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 479 SSGSFLSMSTIVPPDHSRPVLQQSDTIYNIYTVNPTDTTPHNTVFKLPKSAFFYVLY 309
           SSG F+ MS     D S   L +S   YN+ +  P+D     T++  P     YV Y
Sbjct: 438 SSGLFIFMSL----DGSLCALDES---YNLLSYLPSDGAQVETLYSFPDLDQIYVAY 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,102
Number of Sequences: 5004
Number of extensions: 33211
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)