Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6f17
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0602 - 20912739-20913206                                         28   4.0  
02_01_0302 - 2021221-2023305                                           28   4.0  
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753...    27   9.1  

>12_02_0602 - 20912739-20913206
          Length = 155

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 54  LNCFHPKRRN--TSYCA*LEHVLLFNLVNKVIGNYYKN 161
           LNC +PK  N    Y +   H +L NLV +++G YY N
Sbjct: 110 LNCNYPKSINFERKYESFFTHWILTNLVKRIVG-YYIN 146


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 499 YPPTDTGAPGRFY---PCPPSCRPITRGPY 419
           Y PT  G+PGR     P P S  P  RGPY
Sbjct: 385 YTPTPGGSPGRGGQGPPAPVSSPPRRRGPY 414


>04_04_0674 +
           27173948-27174188,27174704-27175260,27175310-27175399,
           27175475-27175714,27175801-27176022,27176124-27176433,
           27176528-27176847,27176906-27177021,27177133-27177227,
           27177331-27177407,27177520-27177615
          Length = 787

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 201 QREFGRRPVIPPTRNRRRF 257
           +RE+GRR  +PP R+R  F
Sbjct: 563 RREYGRRDELPPPRSRATF 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,172,566
Number of Sequences: 37544
Number of extensions: 208364
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)