Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6f17
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024962-1|ABE01192.1|  271|Drosophila melanogaster IP15304p pro...    45   7e-05
AE013599-4011|AAM70805.1| 2011|Drosophila melanogaster CG15792-P...    45   7e-05
AE013599-4010|AAX52688.1| 1971|Drosophila melanogaster CG15792-P...    45   7e-05
AE013599-4009|AAF47311.1| 2056|Drosophila melanogaster CG15792-P...    45   7e-05
AE013599-4008|AAX52687.1| 2016|Drosophila melanogaster CG15792-P...    45   7e-05
U35816-4|AAB09051.1| 1972|Drosophila melanogaster nonmuscle myos...    40   0.003
U35816-3|AAB09050.1| 2012|Drosophila melanogaster nonmuscle myos...    40   0.003
U35816-2|AAB09048.1| 2017|Drosophila melanogaster nonmuscle myos...    40   0.003
U35816-1|AAB09049.1| 2057|Drosophila melanogaster nonmuscle myos...    40   0.003
M35012-1|AAA28713.1| 1972|Drosophila melanogaster protein ( D.me...    40   0.003
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    30   2.2  
BT022830-1|AAY55246.1|  669|Drosophila melanogaster IP13337p pro...    28   6.7  
AE014134-2446|AAF53366.2|  648|Drosophila melanogaster CG18146-P...    28   6.7  
AE014134-2445|AAO41187.1|  701|Drosophila melanogaster CG18146-P...    28   6.7  
AY094631-1|AAM10984.1|  702|Drosophila melanogaster AT03259p pro...    28   8.8  
AM412926-1|CAL85549.1|  287|Drosophila melanogaster CG16772 prot...    28   8.8  
AE014297-2328|AAG22155.2|  702|Drosophila melanogaster CG11896-P...    28   8.8  

>BT024962-1|ABE01192.1|  271|Drosophila melanogaster IP15304p
           protein.
          Length = 271

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFNDP 519
           ++DRNDPEL+YLSV+RN FNDP
Sbjct: 49  EVDRNDPELKYLSVERNQFNDP 70


>AE013599-4011|AAM70805.1| 2011|Drosophila melanogaster CG15792-PB,
           isoform B protein.
          Length = 2011

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFNDP 519
           ++DRNDPEL+YLSV+RN FNDP
Sbjct: 4   EVDRNDPELKYLSVERNQFNDP 25


>AE013599-4010|AAX52688.1| 1971|Drosophila melanogaster CG15792-PC,
           isoform C protein.
          Length = 1971

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFNDP 519
           ++DRNDPEL+YLSV+RN FNDP
Sbjct: 4   EVDRNDPELKYLSVERNQFNDP 25


>AE013599-4009|AAF47311.1| 2056|Drosophila melanogaster CG15792-PA,
           isoform A protein.
          Length = 2056

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFNDP 519
           ++DRNDPEL+YLSV+RN FNDP
Sbjct: 49  EVDRNDPELKYLSVERNQFNDP 70


>AE013599-4008|AAX52687.1| 2016|Drosophila melanogaster CG15792-PD,
           isoform D protein.
          Length = 2016

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFNDP 519
           ++DRNDPEL+YLSV+RN FNDP
Sbjct: 49  EVDRNDPELKYLSVERNQFNDP 70


>U35816-4|AAB09051.1| 1972|Drosophila melanogaster nonmuscle
           myosin-II heavy chain protein.
          Length = 1972

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFN 513
           ++DRNDPEL+YLSV+RN FN
Sbjct: 4   EVDRNDPELKYLSVERNQFN 23


>U35816-3|AAB09050.1| 2012|Drosophila melanogaster nonmuscle
           myosin-II heavy chain protein.
          Length = 2012

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFN 513
           ++DRNDPEL+YLSV+RN FN
Sbjct: 4   EVDRNDPELKYLSVERNQFN 23


>U35816-2|AAB09048.1| 2017|Drosophila melanogaster nonmuscle
           myosin-II heavy chain protein.
          Length = 2017

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFN 513
           ++DRNDPEL+YLSV+RN FN
Sbjct: 49  EVDRNDPELKYLSVERNQFN 68


>U35816-1|AAB09049.1| 2057|Drosophila melanogaster nonmuscle
           myosin-II heavy chain protein.
          Length = 2057

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFN 513
           ++DRNDPEL+YLSV+RN FN
Sbjct: 49  EVDRNDPELKYLSVERNQFN 68


>M35012-1|AAA28713.1| 1972|Drosophila melanogaster protein (
           D.melanogaster non-musclemyosin heavy chain mRNA. ).
          Length = 1972

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +1

Query: 454 DMDRNDPELRYLSVDRNSFN 513
           ++DRNDPEL+YLSV+RN FN
Sbjct: 4   EVDRNDPELKYLSVERNQFN 23


>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
            protein.
          Length = 1286

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
 Frame = -1

Query: 440  PDHSRPVLQQSDTIYNIYTVNPTDTTPHNTVFKLPKSAFFYVLYPWPRTALITTK*R--- 270
            P  SRP      +     T  PT TTP +T     K++        PR+   TT  R   
Sbjct: 1046 PSTSRPTTTTPRSTTTTSTSRPTTTTPRSTT----KTSTCAPTTTTPRSTTTTTTSRPTT 1101

Query: 269  L*PKESTTVTGRRDDRSTPEFT 204
              P+ +TT T  R   +TP  T
Sbjct: 1102 TTPRSTTTTTTSRPTTTTPRST 1123



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = -1

Query: 440 PDHSRPVLQQSDTIYNIYTVNPTDTTPHNTVFKLPKSAFFYVLYPWPRTALITTK-*RL* 264
           P  SRP      +     T  PT TTP  T    P ++      P   T   T++     
Sbjct: 342 PSTSRPTTTTPRSTTKTSTCAPTTTTPRPTT--TPSTSRPTTTTPRSTTTTSTSRPTTTT 399

Query: 263 PKESTTVTGRRDDRSTPEFT 204
           P+ +TT T RR   +TP  T
Sbjct: 400 PRSTTTTTTRRPTTTTPRST 419


>BT022830-1|AAY55246.1|  669|Drosophila melanogaster IP13337p
           protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 508 SCFYPPTDTGAPGRFYPCPPSCRPITRGPYCSN 410
           +CF    DT  P   Y C PSCRP      CS+
Sbjct: 481 ACFAGYEDTKVP---YECVPSCRPRCENGRCSS 510


>AE014134-2446|AAF53366.2|  648|Drosophila melanogaster CG18146-PA,
           isoform A protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 508 SCFYPPTDTGAPGRFYPCPPSCRPITRGPYCSN 410
           +CF    DT  P   Y C PSCRP      CS+
Sbjct: 460 ACFAGYEDTKVP---YECVPSCRPRCENGRCSS 489


>AE014134-2445|AAO41187.1|  701|Drosophila melanogaster CG18146-PB,
           isoform B protein.
          Length = 701

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 508 SCFYPPTDTGAPGRFYPCPPSCRPITRGPYCSN 410
           +CF    DT  P   Y C PSCRP      CS+
Sbjct: 513 ACFAGYEDTKVP---YECVPSCRPRCENGRCSS 542


>AY094631-1|AAM10984.1|  702|Drosophila melanogaster AT03259p
           protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 24  RCRQHVEYLLLNCFHPKRRNTSYC-A*LEHVLLFNL 128
           RC  H+ YLL+N  H + +N   C A  E V++ NL
Sbjct: 518 RCLAHLIYLLINTVHTEAQNKLICQAVHEAVVVGNL 553


>AM412926-1|CAL85549.1|  287|Drosophila melanogaster CG16772 protein
           protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
 Frame = -1

Query: 479 SSGSFLSMSTIVPPDHSRPVLQQSDTIYNIYTVNPTDTTPH--NTVFKLPKSAFFYVLYP 306
           + GS L  ST   P+ + P    + T     T  P    PH     +  P+   + + YP
Sbjct: 93  NDGSALPESTTPEPETTTPTTTTTTTTT---TPKPHKHEPHFHPHSYPHPQPYPYPIQYP 149

Query: 305 WPRTALITTK*--RL*PKESTTVTGRRDDRSTPEFT 204
           +P   +I +    +L P  +T  T +  D+ +PE +
Sbjct: 150 YPHPGVIFSAAGPKLAPPSTTPPTAKDTDKESPELS 185


>AE014297-2328|AAG22155.2|  702|Drosophila melanogaster CG11896-PA
           protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 24  RCRQHVEYLLLNCFHPKRRNTSYC-A*LEHVLLFNL 128
           RC  H+ YLL+N  H + +N   C A  E V++ NL
Sbjct: 518 RCLAHLIYLLINTVHTEAQNKLICQAVHEAVVVGNL 553


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,631,763
Number of Sequences: 53049
Number of extensions: 378876
Number of successful extensions: 1385
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)