Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6f17
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   3.5  
U12966-4|AAA20616.1|  365|Caenorhabditis elegans Carbonic anhydr...    27   8.1  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   8.1  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 202  NVNSGVDRSSLLPVTVVDSF-GYNRHFVVIRAVRGH 306
            NV      S+++PV  VDSF G  R  V++  VR H
Sbjct: 1403 NVFGSTPDSNVIPVETVDSFQGKERKIVIVSLVRSH 1438


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 502 FYPPTDTGAPGRFYPCPPSCRPITRGP 422
           F PP  +G PG F P PPS     +GP
Sbjct: 378 FAPPPQSGPPGAFAP-PPSAFGAPQGP 403


>U12966-4|AAA20616.1|  365|Caenorhabditis elegans Carbonic anhydrase
           protein 1 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 519 WIIEAVSIHRQIPELRVVSIHVH 451
           W++  +  H Q+P+L+VVS  V+
Sbjct: 131 WVVYIIIFHAQVPQLQVVSEFVN 153


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 490 TDTGAPGRFYP-CPPSCRPITRGPYCSN 410
           T T  PG+  P C  SC P T GP C++
Sbjct: 831 TCTCLPGKTGPLCDQSCAPNTYGPNCAH 858


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 490 TDTGAPGRFYP-CPPSCRPITRGPYCSN 410
           T T  PG+  P C  SC P T GP C++
Sbjct: 831 TCTCLPGKTGPLCDQSCAPNTYGPNCAH 858


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,618,655
Number of Sequences: 27780
Number of extensions: 192997
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)