Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6f15
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...   109   4e-25
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    60   4e-10
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    35   0.009
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    26   5.3  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   5.3  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    25   9.3  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    25   9.3  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score =  109 bits (261), Expect = 4e-25
 Identities = 50/107 (46%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
 Frame = +2

Query: 215 KKCRLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKM--SPKK 388
           ++ R++ +L +   FFF+E+I GY  +S+AL+ADSFHML+D+ +L++A  + ++  S   
Sbjct: 6   RQTRIILLLGIDVTFFFIEIITGYAIDSLALIADSFHMLNDIVSLLVALWATRLAHSTSH 65

Query: 389 WSKNTFGWARAEVLGALVNAVFLVALCFSITVEAVKRFIEFEVIHNP 529
             K T+GW RAE+LGAL N VFL+ALC  I +EA++RFIE   + NP
Sbjct: 66  EPKYTYGWQRAEILGALSNGVFLIALCMFIFMEAIERFIEPPSVSNP 112


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +2

Query: 245 LTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWS-KNTFGWARA 421
           L   + FV++I G  TNS+ L++D+ HM  D  A+++  ++  ++    +    FG+A+ 
Sbjct: 356 LNVSYMFVQVIYGLWTNSLGLISDAIHMAFDCIAILVGLVATTLAKMPLNYAYPFGFAKI 415

Query: 422 EVLGALVNAVFLVALCFSITVEAVKR 499
           E L    N +FLV + FSI  EA+ R
Sbjct: 416 EALSGFTNGIFLVLISFSIVGEALYR 441


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 275 IVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKK-WSKNTFGWARAEVLGALVNAV 451
           I G    S  LVAD+ H L D  + ++   ++K+  KK   K   G+ + E +G    + 
Sbjct: 93  IGGVALQSSILVADAAHQLGDTLSDLVTLATLKICSKKPTQKYPAGFGKWETIGTFTVSG 152

Query: 452 FLVALCFSITVEAVKR 499
            LVA+   I   ++ R
Sbjct: 153 LLVAVSVGIAHSSLSR 168


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 205 VFRKEM-SSPVHVMPNRRLLLCGADCGLH 288
           +F++E  SSP  + PN  L+L G   G+H
Sbjct: 14  IFQREFGSSPTALTPNEYLVLAGTIHGVH 42


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 538 KEFRVMYDFELYKPLNGLNCNTEAKSHQEYCVHESAQNFSTSPAESV 398
           K ++ + DFE +   N   CN +     +YC  ++    STSP E V
Sbjct: 95  KVWKKLSDFEPHSKKNDTKCNWKYNPDLDYCYLDN----STSPDEYV 137


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 478 NTEAKSHQEYCVHESAQNFSTSPAESVL 395
           N EAK+H++   H+  +   T+ AE+ L
Sbjct: 20  NNEAKNHEDEETHQKKRRRRTTDAEATL 47


>SPAC12B10.09 |||S-adenosylmethionine transporter
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 50 CEVKSILYWNINL 88
          C +K I+YWNI L
Sbjct: 22 CRIKEIMYWNICL 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,783
Number of Sequences: 5004
Number of extensions: 51398
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)