Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6f15
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 60 1e-09
05_01_0214 - 1615519-1616775 57 1e-08
02_05_1345 + 35825552-35825834,35825914-35826022,35826098-358261... 43 2e-04
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 41 7e-04
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 29 2.4
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 29 4.1
01_01_0764 + 5910687-5910961,5912549-5912636,5912750-5912909,591... 28 5.5
08_01_0526 + 4575160-4576719 28 7.2
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 27 9.6
>08_02_0707 - 20212190-20214592
Length = 800
Score = 60.1 bits (139), Expect = 1e-09
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Frame = +2
Query: 215 KKCRLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLS--VKMSPKK 388
K ++ L + + FVE G++++S+ L++D+ HML D AAL I + + P
Sbjct: 359 KSRKIAAFLLINTAYMFVEFTSGFMSDSLGLISDACHMLFDCAALAIGLYASYIARLPAN 418
Query: 389 WSKNTFGWARAEVLGALVNAVFLVALCFSITVEAVKRFIE 508
N +G R EVL VNAVFLV + I +E+ +R +E
Sbjct: 419 GLYN-YGRGRFEVLSGYVNAVFLVLVGALIVLESFERILE 457
>05_01_0214 - 1615519-1616775
Length = 418
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +2
Query: 209 SGKKCRLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSP-K 385
S +K + +LC+ F VE++ G NS+A++ D+ H+LSDVAA I+ S+ + +
Sbjct: 54 SMRKLIIAVILCII--FMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWE 111
Query: 386 KWSKNTFGWARAEVLGALVNAVFLVALCFSITVEAVKRFI 505
+ ++G+ R E+LGALV+ + L + EA+ R I
Sbjct: 112 ATPQQSYGFFRIEILGALVSIQLIWLLAGILVYEAIVRLI 151
>02_05_1345 +
35825552-35825834,35825914-35826022,35826098-35826137,
35827481-35827522,35827605-35827694,35828400-35828470,
35829375-35829463,35829583-35829652,35829898-35830048,
35830146-35830235,35830549-35830647
Length = 377
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 224 RLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSK-N 400
RL ++ L + EL +G +T + LV+D+FH+ L + ++ S K
Sbjct: 69 RLALLIALNVAYSATELAIGLLTARVGLVSDAFHLTFGCGILTFSLFAMAASRTKPDHLY 128
Query: 401 TFGWARAEVLGALVNAV 451
T+G+ R EVL A NA+
Sbjct: 129 TYGYKRLEVLAAFTNAL 145
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +2
Query: 275 IVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSK-NTFGWARAEVLGAL-VNA 448
+ GY++ S A+ AD+ H LSD+ +A LS K + K + +G + E LGAL +++
Sbjct: 96 VTGYLSGSTAIAADAAHSLSDIVLSGVALLSYKAAKAPRDKEHPYGHGKFESLGALGISS 155
Query: 449 VFLV 460
+ LV
Sbjct: 156 MLLV 159
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 186 LKLQFGLDVNNYQYPSVETSFKNSKCANSFVDNRLMFQYNIDLTSH 49
L+L F DVN+ Q KN + A F ++R F Y L S+
Sbjct: 275 LELDFDTDVNDIQIRGGNRDQKNIQLAKQFPNSRHFFTYRHSLQSY 320
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 517 DFELYKPLNGLNCNTEAKSHQEYCVHESAQNFSTSP 410
+FE+ P + NT AK EYC H++ +T P
Sbjct: 80 NFEVDYPDSCKESNTYAKEFLEYCCHKALHEVTTRP 115
>01_01_0764 +
5910687-5910961,5912549-5912636,5912750-5912909,
5913017-5913237,5913315-5913610,5914176-5914287,
5914376-5914514,5914850-5915046,5915134-5915223,
5915611-5915646
Length = 537
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 197 MGRYSGKK--CRLLCMLCLTGGFFFVELIVGYITNSMALVA 313
+ R GK+ C +L MLCLT G FF ++ +S ++ A
Sbjct: 147 LSRKYGKRLACYVLAMLCLTSGCFFAS--TSFLPSSFSMYA 185
>08_01_0526 + 4575160-4576719
Length = 519
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 236 MLCLTGG--FFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSKNTFG 409
+L L GG F +++VG + VA M A L++ F+ + ++ WS G
Sbjct: 349 VLFLQGGTQMFISQVVVGTLIALQFGVAGVGEMSRSYAILLVLFICMYVAGFAWSWGPLG 408
Query: 410 W-ARAEVLGALV-NAVFLVALCFSITVEAV 493
W +EV + +A +A+C ++ + V
Sbjct: 409 WLVPSEVFALEIRSAGQSIAVCVNMMLTFV 438
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 342 ATSLNI*NESATRAIELVM*PTISSTKKKPPVRHNMHRRRHF 217
ATS + S+T A P + S + PP ++RRRHF
Sbjct: 2 ATSHLLAAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHF 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,449
Number of Sequences: 37544
Number of extensions: 327277
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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