Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6f15
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 84 9e-17
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 84 9e-17
AL132876-3|CAD21657.2| 746|Caenorhabditis elegans Hypothetical ... 75 3e-14
AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical ... 62 2e-10
AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical ... 62 2e-10
Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z81585-1|CAB04681.2| 343|Caenorhabditis elegans Hypothetical pr... 35 0.057
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 28 4.9
AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical ... 28 4.9
AF078781-4|AAC26918.1| 255|Caenorhabditis elegans Hypothetical ... 28 6.5
AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine re... 28 6.5
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 83.8 bits (198), Expect = 9e-17
Identities = 38/101 (37%), Positives = 63/101 (62%)
Frame = +2
Query: 227 LLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSKNTF 406
L+ + +T F +E I G + +S+A++ADS+HM +DV ALI+AF +K++ + ++ +
Sbjct: 113 LIIQIGMTVIFCALEFITGVVCSSIAMLADSYHMAADVMALIVAFTCIKIATRPSTRLGY 172
Query: 407 GWARAEVLGALVNAVFLVALCFSITVEAVKRFIEFEVIHNP 529
GW RAE LG N +F+ +C + EAV R I +I +P
Sbjct: 173 GWVRAETLGGFFNGIFMCTVCVLVFQEAVGRIINVHMITHP 213
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 83.8 bits (198), Expect = 9e-17
Identities = 38/101 (37%), Positives = 63/101 (62%)
Frame = +2
Query: 227 LLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSKNTF 406
L+ + +T F +E I G + +S+A++ADS+HM +DV ALI+AF +K++ + ++ +
Sbjct: 71 LIIQIGMTVIFCALEFITGVVCSSIAMLADSYHMAADVMALIVAFTCIKIATRPSTRLGY 130
Query: 407 GWARAEVLGALVNAVFLVALCFSITVEAVKRFIEFEVIHNP 529
GW RAE LG N +F+ +C + EAV R I +I +P
Sbjct: 131 GWVRAETLGGFFNGIFMCTVCVLVFQEAVGRIINVHMITHP 171
>AL132876-3|CAD21657.2| 746|Caenorhabditis elegans Hypothetical
protein Y105E8A.3 protein.
Length = 746
Score = 75.4 bits (177), Expect = 3e-14
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Frame = +2
Query: 224 RLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSKN- 400
R+ LC+ GF VE + G+ TNS+ L++D FHML D +AL++ ++ M+ +W
Sbjct: 403 RIFWFLCVNLGFCGVEFLYGFWTNSLGLISDGFHMLFDCSALVMGLVASVMA--RWPPTR 460
Query: 401 --TFGWARAEVLGALVNAVFLVALCFSITVEAVKRFIE 508
TFG+ R E+L +NA+FL + I +EA++R +
Sbjct: 461 HFTFGFGRVEILSGFINALFLCVIALFILIEALERLFD 498
>AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical
protein Y39E4A.2b protein.
Length = 410
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = +2
Query: 227 LLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSKN-T 403
L + L+ F E + G+ S+A++ D+ HMLSD+ + II+ +++ + SK +
Sbjct: 105 LWAVAALSAVFIAAEFVGGFWAQSLAIMTDAGHMLSDLLSFIISIFAIRCARLPASKRLS 164
Query: 404 FGWARAEVLGALVNAVFLVALCFSITVEAVKRFIEFE 514
FG+ RAEVLGAL + + L L + V A++R + E
Sbjct: 165 FGYERAEVLGALTSVIILWVLTTVLVVVAIQRIVNNE 201
>AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical
protein Y39E4A.2a protein.
Length = 391
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = +2
Query: 227 LLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSKN-T 403
L + L+ F E + G+ S+A++ D+ HMLSD+ + II+ +++ + SK +
Sbjct: 86 LWAVAALSAVFIAAEFVGGFWAQSLAIMTDAGHMLSDLLSFIISIFAIRCARLPASKRLS 145
Query: 404 FGWARAEVLGALVNAVFLVALCFSITVEAVKRFIEFE 514
FG+ RAEVLGAL + + L L + V A++R + E
Sbjct: 146 FGYERAEVLGALTSVIILWVLTTVLVVVAIQRIVNNE 182
>Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical
protein T18D3.3 protein.
Length = 360
Score = 55.6 bits (128), Expect = 3e-08
Identities = 36/101 (35%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Frame = +2
Query: 227 LLCMLCLTGGFFFV-ELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWS-KN 400
L +LCL FF V E+I G + S+A+V D+ H+L+D A+++I+ S+ ++ + S K
Sbjct: 56 LTVVLCL---FFMVCEVIGGVLAGSLAIVTDAAHLLTDFASVLISLFSLYIARRPPSQKM 112
Query: 401 TFGWARAEVLGALVNAVFLVALCFSITVEAVKRFI--EFEV 517
+FG+ RAEVLGA + + + + V A+ R + ++EV
Sbjct: 113 SFGFHRAEVLGAFFSVFLIWIVTGVLVVLAIMRIVSGDYEV 153
>Z81585-1|CAB04681.2| 343|Caenorhabditis elegans Hypothetical
protein T05E12.1 protein.
Length = 343
Score = 34.7 bits (76), Expect = 0.057
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Frame = +2
Query: 206 YSGKKCRLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLS-DVAALIIAFLS--VKM 376
Y+ C +L LCL +FF++ + + + +SF M S DVA + + + S +
Sbjct: 130 YTSSPCFVLLFLCLIQAWFFMKPVPETQLHYQKIFRESFDMDSFDVAFVAMKYKSSPTES 189
Query: 377 SPKKWS-KNTFGWARAEVLGALVNAVFLVALCFSITVEAVKRF 502
P+ W+ + FG+ V+ + + VF + C T +K+F
Sbjct: 190 IPEHWNIQQVFGFLFCVVI--MQSCVFAILFCGLRTFFYMKKF 230
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +2
Query: 200 GRYSGKKCRLLCMLCLTGGFFFVELIVGYITN----SMALVADSFHMLSDVAALIIAFLS 367
GR GK C+LL +C+ F + ++ + + +M + H+ + LI+A
Sbjct: 133 GRAMGKTCQLLVSICIDVTQFMISVVYLLLASKNIMNMIIAFSGTHISFCILILIVATCL 192
Query: 368 VKMSPKKWSKNTFGWARAEVLGALVNAVFLV 460
+ + K S F WA + AV L+
Sbjct: 193 LPLCFLK-SPQDFWWAVVIAMMTTSAAVILI 222
>AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical
protein F54D7.2 protein.
Length = 393
Score = 28.3 bits (60), Expect = 4.9
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +2
Query: 182 FSI*TMGRYSGKKCRLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAF 361
FSI GR+S LLC+L T FF Y T M L S+ L+I +
Sbjct: 151 FSIFGRGRFSISSVELLCVLISTQIVFFTTHWEKYNTGIMFL---SWAYDVSQFGLVIVY 207
Query: 362 LSVKMSPKKWSKNT-FGWARAEVLGALVNAVFLVALCF 472
L W+ + W +VLG +VN F + F
Sbjct: 208 L--------WTYIVGYQWFHFDVLGGIVNFAFTFEIGF 237
>AF078781-4|AAC26918.1| 255|Caenorhabditis elegans Hypothetical
protein B0545.4 protein.
Length = 255
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -2
Query: 582 SPIMFNSRPRLPTATRSFGLCMT-SNSINLL--TASTVILKQRAT 457
+P+ +S PRL R F +C T S+ + L TA T++ K R T
Sbjct: 160 NPLSKSSYPRLSQFARRFVICPTGSSEVERLFSTAGTILTKYRKT 204
>AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine
receptor, class x protein9 protein.
Length = 309
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +2
Query: 290 TNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALC 469
TNSM LV DS + I F+S++ S KK S R + + L+ F+
Sbjct: 173 TNSMFLVYDSICTSISIFCYIGVFISIRNSNKKVSTQIQKQRRKQEIRYLLQ--FMFTSV 230
Query: 470 FSITVEAVKRFIEF 511
F IT + +++
Sbjct: 231 FYITTWVIFEILQY 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,392,627
Number of Sequences: 27780
Number of extensions: 296187
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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