Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6f04
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 33 0.035
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 1.7
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.0
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.0
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 3.0
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 26 4.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 5.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.2
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 6.9
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 25 9.1
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 33.1 bits (72), Expect = 0.035
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = -2
Query: 594 LKEVSMKQLISFQIEYHDRWSDNLISCTPNISKTSIHNPKSVTRVNVNSKH*NNSFI 424
L + S+ ++F +E+H+ + NL + T NI T IHN + + ++ K +++F+
Sbjct: 522 LIDSSLISSLAFLLEHHEVYGSNLFASTTNIMSTFIHNEPTCYGI-IHEKKLSHAFL 577
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 594 LKEVSMKQLISFQIEYHDRWSDNLISCTPNISKTSIHNPKSVTRVNVNSKH 442
++ +S K L S + I TP I+KTS++ K ++N KH
Sbjct: 797 IRLLSQKSLASVSSVSSISTYSSSIELTPQITKTSLNREKPALHGSINLKH 847
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 269 FHRPKPKGKLFAGTKSPLLMAFSRSAGVFHS*ST--SFQANRS 147
F+R + + F T+SP + SRS+ H S+ SF +NRS
Sbjct: 43 FYRGRSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRS 85
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -1
Query: 310 HHSSTWAPLQTICFSIALSPKANYSLVQSHHF*WHSHV 197
H++ +W P +T+ L K + L+ F W H+
Sbjct: 193 HYALSWLPAKTLAREAILKAKDSPILIVDQFFPWKGHL 230
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 564 SFQIEYHDRWSDNLISCTPNISKTSIHN-PKSVTRVNVNSKH*NN 433
S Q+ + ++NL+S +PN+ TS+++ ++TR N+N N+
Sbjct: 722 SLQLRVLELMTENLLSLSPNL--TSVNSLETAMTRYNINEDQRNS 764
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 316 SSLNYVDLNGTSDQLLKPYPSLKD-NFIPDSAK--DLPSNKTIISVFRI 453
+ LN +DLN +SDQ L PSL+ + PDS K + P + +I++ I
Sbjct: 65 NQLNELDLNDSSDQ-LDSRPSLRRVSSAPDSHKGVEAPPPRPLINMSNI 112
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 358 LLKPYP---SLKDNFIPDSAKDLPSNKTIISVFRIYIDPCDRLWVMDTGLADI 507
LLK Y SL++ IP+SAK P N ++ IY+ L + DI
Sbjct: 1487 LLKAYAMGTSLEELTIPESAKCSPLNYRVVWQLAIYLSKARSLCDFSDRVVDI 1539
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.2
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Frame = -3
Query: 287 VTNNLFFHRPKPKGKLFAGTKSPLLMAFSRSAGVF-HS*STSFQANRSCGVAASHDATTK 111
VT+N P + TKSP + S S+G F HS +F + SH +T
Sbjct: 3676 VTSNKVPSTVSPHSSSISDTKSPATVTISSSSGQFTHS---TFSTGSTMHNTVSHATSTS 3732
Query: 110 AMANASSFIVYERVYNEEYRQGQSTTGSAGPQAQTK 3
+ S + Q ++ S P TK
Sbjct: 3733 SSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGLSTK 3768
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 301 KNGVASSLNYVDLNGTSDQLLKPYPSLKDNFIPDSAKDLPSNKTIIS 441
+N V+ VD++ +++ L IP + DLPS+ I S
Sbjct: 652 RNKVSLKGASVDISSKDKEIISQKKQLSPKLIPSTPYDLPSSSQISS 698
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +1
Query: 526 IVRPSIVIFDLKTDQLLHRYFFKLEDMKE 612
++ ++ ++ + DQL+ YF+K D+K+
Sbjct: 145 VINTNLRVYKNQYDQLVRPYFYKHADLKQ 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,811
Number of Sequences: 5004
Number of extensions: 58451
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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