Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6f04
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006807-5|AAK84619.1|  349|Caenorhabditis elegans Hypothetical ...    28   4.9  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AC006807-5|AAK84619.1|  349|Caenorhabditis elegans Hypothetical
           protein Y58A7A.5 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 95  SSFIVYERVYNEEYRQGQSTTGSA 24
           S+F V+ RV N+EY+QG+    SA
Sbjct: 189 STFAVHSRVLNKEYKQGEFEIRSA 212


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 364 LEVDLRYHSNQHNSTKKRHHSSTWAPLQTICFSIALSPKANYSLVQSHHF 215
           +E +LR    +    K   H+ TW   Q +  S++L  K  Y+L  ++ F
Sbjct: 371 MEEELRDKIRKKIDDKVNEHNGTWIDWQYLHKSVSLLTKCRYTLQYTYPF 420


>Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical
           protein T21H8.1b protein.
          Length = 962

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 241 NLPLGLGRWKNKLFVTVPKWKNGVASSLNYVDLNGTSDQLLKPYP 375
           +LP G+G+  + L  T+P  K  VAS  +  +L G+   + +P P
Sbjct: 499 SLPRGVGKASSTL--TLPSKKLSVASGTSVGELGGSMSSVAQPTP 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,900,496
Number of Sequences: 27780
Number of extensions: 321920
Number of successful extensions: 873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)