Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e22
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    29   0.78 
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    27   2.4  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    27   3.1  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   9.6  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   9.6  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 457 PYTFKHHTFS*K-RFRNPKITFEFYIVVFDGHLLSFQY-SFLYK*CSF 320
           P++  +  FS    + +P    E+  +V+ GHL +F+Y   L K CSF
Sbjct: 248 PFSLDYRPFSPLLAWSSPLANVEYLALVYPGHLFAFRYDKSLGKFCSF 295


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +2

Query: 149 NKKIYPPQQIDEPTR--PAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKK 322
           N++  P   +  PT     FV H + + +    +   +   I+    DE LKQL    KK
Sbjct: 3   NQQSQPEFVLRAPTEFSEKFVRHLQESTETDTSRYMDMENYIQKRVQDE-LKQLQLRQKK 61

Query: 323 GALFVKEAVLEAQEMAIKDHNVEFKSNLWVAE 418
               ++E   ++    IKD      SNL  AE
Sbjct: 62  AIDAIQEEEWKSNAKTIKDSQGSLDSNLLSAE 93


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +3

Query: 21  TCLIHLKIFSSPI*S-TINVTIFTPIRYI*HGQRRLHQNLLFKITRKFILHNKLMNQLDQ 197
           TCLI     ++PI + T N+++   + Y  HG   L      K+T   +L  +L+N L  
Sbjct: 430 TCLIRQYDHNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQLLKKQLLNLLQA 489

Query: 198 HLCVIKKLILNTAQISFGM*PVSY 269
              +    + +T +      PV++
Sbjct: 490 DNSINMSDVPSTKEAKDDKAPVTF 513


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -1

Query: 307 T*LF*CFINSHSSYETGYIPKLIWAVFNISFLMTHKCWSSWFINLLWRINFLVILNKRFW 128
           T +F CF  S      GY   L +A F+   L+       +    LW +  L+  N  FW
Sbjct: 168 TVIFYCFSPSGIYMSVGYTESL-FAAFSFLGLLLFIKKQQYPAAFLWSLATLIRSNGIFW 226

Query: 127 C 125
           C
Sbjct: 227 C 227


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 221 NIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKS 400
           +++Y       +AC   G     AL  LS + +    FV++  + AQ M +  HN +  S
Sbjct: 630 HVRYGSAIALGIACANSGSNA--ALDLLSRLVEDATDFVRQGAMIAQAMILTQHNDQLNS 687

Query: 401 NL 406
            +
Sbjct: 688 KV 689


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 164 PPQQIDEPTRPAFVCHQKTNIKYSPDKLWY 253
           PP+Q+D P  P F     + I  SP   +Y
Sbjct: 114 PPEQLDSPCYPHFDQDSSSVIYPSPPSTYY 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,292
Number of Sequences: 5004
Number of extensions: 58551
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)