Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6e22
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical ... 101 6e-22
Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical pr... 30 1.3
L16621-8|AAA28228.1| 632|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z68134-4|CAA92224.1| 567|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82057-5|CAB04861.3| 325|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81142-11|CAB03512.3| 325|Caenorhabditis elegans Hypothetical p... 28 5.1
AC006673-6|AAF39926.2| 335|Caenorhabditis elegans Serpentine re... 28 5.1
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 27 8.9
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical... 27 8.9
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 27 8.9
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 27 8.9
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 27 8.9
>AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical
protein Y39A1A.6 protein.
Length = 260
Score = 101 bits (241), Expect = 6e-22
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Frame = +2
Query: 128 PKSFIQNNKKIYPPQQIDEPT---RPAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALK 298
P+ + NK ++PP I T +P V H K ++ +SP ++W L+ M VDEA+
Sbjct: 90 PEKWEYYNKVVWPPNYIVPETGLPKPKEVFHCKESVHFSPKRMWAACQLVWKMNVDEAIT 149
Query: 299 QLSFVNKKGALFVKEAVLEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRL 478
QL K + + + +A+ A + ++E+ S ++VA++F + + KG RRHA
Sbjct: 150 QLDMQQLKACNLLMDTIKKAKSRAADEFHIEYPSQMYVADAFPVQSNIVKGARRHAHDNW 209
Query: 479 GEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 628
+RY+Y H FVRLEEG P + + + ++ +R R + S
Sbjct: 210 NTIRYRYIHIFVRLEEGPAPQQKQRHPQKNGWDHMDEYYNYLRSRTVKYS 259
>Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical
protein T22C1.9 protein.
Length = 195
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 268 YETGYIPKLIWAVFNISFLMTHKCWSSWFINLLWRI 161
Y+ Y P W V ++ F+ + WF+ +WR+
Sbjct: 28 YDHHYYPMWFWIVISVGFVFCTLSCAVWFMCAMWRL 63
>L16621-8|AAA28228.1| 632|Caenorhabditis elegans Hypothetical
protein ZK688.2 protein.
Length = 632
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 461 HARGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQ 586
H + R E++YKYS Y+V + T ++K L+ S+ Q
Sbjct: 166 HEKDRFDEIQYKYSKYWVPFQWAFSLTYEARKKGLIESDYYQ 207
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 289 FINSHSSYETGYIPKLIWAVFNISFLMTHKCWSSWFINLLWRINF 155
FI ++ Y L ++FN + L C +SW+ NL++ NF
Sbjct: 369 FIGFYAVYALYIQGPLAASLFNFTVLQVEACKASWWRNLIYINNF 413
>Z68134-4|CAA92224.1| 567|Caenorhabditis elegans Hypothetical
protein T27A8.5 protein.
Length = 567
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 138 LFKITRKFILHNKLMNQLDQHLCVIKKLILNT 233
L + K ++K Q D H+C K ILNT
Sbjct: 357 LAMVANKMFTNSKSSGQFDTHMCAALKYILNT 388
>Z82057-5|CAB04861.3| 325|Caenorhabditis elegans Hypothetical
protein ZK1037.11 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 230 YSPDKLWYVACLIRGMTVDEALKQLSFV 313
Y P+K WYVAC + L Q+S++
Sbjct: 250 YYPEKFWYVACKVWDCYFTAVLIQVSYL 277
>Z81142-11|CAB03512.3| 325|Caenorhabditis elegans Hypothetical
protein ZK1037.11 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 230 YSPDKLWYVACLIRGMTVDEALKQLSFV 313
Y P+K WYVAC + L Q+S++
Sbjct: 250 YYPEKFWYVACKVWDCYFTAVLIQVSYL 277
>AC006673-6|AAF39926.2| 335|Caenorhabditis elegans Serpentine
receptor, class h protein7 protein.
Length = 335
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 224 Y*FFDDTQMLVELVHQFVVEDKFSCYFE*KILVQSPLSMLDVTNWCENC-YIDCTSNWRR 48
Y FF ++V L+ F++ E K+ ++ + WC+NC + + SN R
Sbjct: 138 YAFF--ISLIVVLIFTFLIYPDLKYQKEYKLKMEQRFGQFETYMWCDNCFFFNFDSNLFR 195
Query: 47 KYF 39
+F
Sbjct: 196 WFF 198
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 68 NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 196
+Q N+ +++ +H T P +QN K PPQ D+ T P
Sbjct: 41 HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 82
>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
protein Y75B8A.24 protein.
Length = 2121
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 47 FVSNLKYNQCNNFHTNSLHLAWT--KATAPKSFIQNNKKIYPPQQIDEPTRPAFVCH 211
F S KY + + L WT A AP+ F++ +K+ + DEPT A V H
Sbjct: 891 FSSFFKYIEDKTMRKDKSGL-WTCMLAAAPRIFLEWCEKMMKRRDNDEPTEEALVWH 946
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 68 NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 196
+Q N+ +++ +H T P +QN K PPQ D+ T P
Sbjct: 38 HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 79
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 68 NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 196
+Q N+ +++ +H T P +QN K PPQ D+ T P
Sbjct: 47 HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 88
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 68 NQCNNFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRP 196
+Q N+ +++ +H T P +QN K PPQ D+ T P
Sbjct: 40 HQLNSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQS-DQETAP 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,407
Number of Sequences: 27780
Number of extensions: 320447
Number of successful extensions: 770
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -