Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e18
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   2.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   4.6  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    24   4.6  

>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 32  FTLVLYLDXVFLKYHARMRALNSEYY-CLLI 121
           FTLVLYLD V  + H   R  N  ++ CL I
Sbjct: 90  FTLVLYLDTVIRRDHPLKRYENWIWHVCLSI 120


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 277 FFFXFXFFFFF 245
           FF+ F FFFFF
Sbjct: 74  FFYWFFFFFFF 84



 Score = 23.8 bits (49), Expect = 4.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 275 FFXFXFFFFFF 243
           F+ F FFFFFF
Sbjct: 75  FYWFFFFFFFF 85


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 11  LVMFRE-YFTLVLYLDXVFLKYHARMRALNS 100
           L+ F E +++L  YLD   LKY    R  NS
Sbjct: 458 LIFFEERFYSLYSYLDSRGLKYEEVQRYYNS 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,673
Number of Sequences: 5004
Number of extensions: 5631
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)