Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6e18
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 25 6.5
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695... 25 6.5
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 25 8.7
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 275 FFXFXFFFFFFXXXV 231
FF F FFFFFF V
Sbjct: 98 FFFFFFFFFFFSGDV 112
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 87 FFFFFFFFFFF 97
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 88 FFFFFFFFFFF 98
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 89 FFFFFFFFFFF 99
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 90 FFFFFFFFFFF 100
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 91 FFFFFFFFFFF 101
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 92 FFFFFFFFFFF 102
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 93 FFFFFFFFFFF 103
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 94 FFFFFFFFFFF 104
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 95 FFFFFFFFFFF 105
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 96 FFFFFFFFFFF 106
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 97 FFFFFFFFFFF 107
>01_07_0378 -
43167805-43169152,43169258-43169326,43169473-43169544,
43169677-43169745,43169979-43171161,43171239-43171365
Length = 955
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 275 FFXFXFFFFFFXXXV 231
FF F FFFFFF V
Sbjct: 16 FFFFFFFFFFFAVAV 30
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 62 FFFFFFFFFFF 72
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 63 FFFFFFFFFFF 73
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 64 FFFFFFFFFFF 74
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 65 FFFFFFFFFFF 75
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 66 FFFFFFFFFFF 76
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 67 FFFFFFFFFFF 77
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 68 FFFFFFFFFFF 78
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 69 FFFFFFFFFFF 79
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 70 FFFFFFFFFFF 80
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 71 FFFFFFFFFFF 81
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 275 FFXFXFFFFFF 243
FF F FFFFFF
Sbjct: 72 FFFFFFFFFFF 82
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 73 FFFFFFFFFFF 83
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 74 FFFFFFFFFFF 84
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 75 FFFFFFFFFFF 85
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 277 FFFXFXFFFFF 245
FFF F FFFFF
Sbjct: 76 FFFFFFFFFFF 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,822
Number of Sequences: 37544
Number of extensions: 24318
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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