Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e05
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    30   0.25 
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    25   7.2  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   7.2  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   7.2  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   9.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.5  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   9.5  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 229 SHDGSSVVAADDNLDINARVEEERRRMQPTKLESFFAITK 348
           S    +V  A+  +D++A   E+RRR + +KL SFFA  K
Sbjct: 368 SGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQK 407


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 549 NLAAQWFGVWRLVFRSEW 602
           N  ++W+G+ RL F+ EW
Sbjct: 160 NSRSRWYGLARLNFKGEW 177


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 388 SMFRQPSAPKTDINNPSSAPRAPAVNMF 471
           S+  Q   P+  + NPS AP A  VN+F
Sbjct: 258 SLVPQMPYPQNGMYNPSVAPPASLVNLF 285


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 628 LLSDCMIHHHSDLNTNLHTPNHCAAKLNLNC 536
           LL+   +H+  DL     T  HC  +   NC
Sbjct: 378 LLNRSQVHYFRDLGYQHSTIQHCGQEYGCNC 408


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 167 FSASDMITKKQFN*FTLYCMT*RYFIYN---NIMLHWFKIICRYLRRY 33
           FSA   + KK  N F+LY     +++ N   N +L + K   R+LR Y
Sbjct: 233 FSAIGGLIKKALNEFSLYKTNISFYLSNFIVNGVLQYRKEFQRWLRLY 280


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 400 QPSAPKTDINNPSSAPRAPA 459
           QP AP T   NPS +P AP+
Sbjct: 316 QPPAPSTLQFNPSPSPAAPS 335


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 ISHDGSSVVAADDNLDINARVEEERRRM 309
           ++ D S +V  DDN        EE RRM
Sbjct: 727 VAKDASDIVLTDDNFSSIVNAIEEGRRM 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,991
Number of Sequences: 5004
Number of extensions: 48225
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)