Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6e05
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 45 5e-05
11_04_0443 - 17808897-17809110,17809169-17813652 31 0.60
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911... 31 0.80
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457... 29 3.2
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 29 4.2
10_08_0271 - 16382655-16384451 29 4.2
10_08_0270 + 16378878-16380566 29 4.2
01_01_0206 - 1770622-1771347 28 7.4
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 45.2 bits (102), Expect = 5e-05
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 355 IIRALVVYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQEFNTNF 534
I+R V ++ + F P P + P N+F G LDM+ YLSE E +F
Sbjct: 38 IVRMAVFWYFAAKFFGPKRPPAE-------PGMLMSNLFQKGEPLDMWMYLSENEKFNDF 90
Query: 535 DNSN-LIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFAL 651
N + L+W + + Y W GP + +H+ + PS A+
Sbjct: 91 SNEDALVWHEANIPYAVW--GPT--STRTHTLTYYPSEAI 126
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 481 TILDMYCYLSEQEFNTNFDNSNLIWQHSGLVYGDWYSGPN 600
TI +Y YL + + ++SN +W SG+ G+W S N
Sbjct: 1210 TISRIYMYLMDCNWKPVNNSSNWVWVPSGIQSGEWVSPAN 1249
>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
17791210-17795913,17797414-17797624,17798478-17798666
Length = 1757
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 475 NGTILDMYCYLSEQEFNTNFDNSNLIWQHSGLVYGDWYSGPN 600
+ TI +Y YL + + SN +W +G G+W S P+
Sbjct: 1326 SATISRIYLYLKDCNWEPENKTSNWVWLPNGSGSGEWVSAPS 1367
>06_03_0868 -
25544933-25544938,25544939-25545142,25545494-25545751,
25546625-25546906
Length = 249
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 328 SFFAITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSA-PRAPAVNMFANGTILDM 495
+FFA + ++ + V++ R K N P+ A PRA V NG +L++
Sbjct: 143 TFFATSIGIVAAFISVFWAFGYIRLSQRLKRTANKPAKAPPRADVVKNLKNGIVLNV 199
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 454 PAVNMFANGTILDMYCYLSEQEFNTNFDNSNLIWQHSGLVYGDWYSGPNGDGSYSHS 624
P + ANG+I +EF+ + ++ ++W S ++ +SG D S+S++
Sbjct: 415 PKLLQAANGSITRRNSSFGTEEFSEDINSKTILWSDSASMHP--FSGKQPDESFSYN 469
>10_08_0271 - 16382655-16384451
Length = 598
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 229 SHDGSSVVAADDNLDINARVEEERRRMQPTKLESFFAITKSLI 357
+H SV ++D++ NA +EE RR+ P +E SLI
Sbjct: 480 NHADYSVYISEDDVRRNASIEERLRRIAPAAVERMRETVISLI 522
>10_08_0270 + 16378878-16380566
Length = 562
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 229 SHDGSSVVAADDNLDINARVEEERRRMQPTKLESFFAITKSLI 357
+H SV ++D++ NA +EE RR+ P +E SLI
Sbjct: 444 NHADYSVYISEDDVRRNASIEERLRRIAPAAVERMRETVISLI 486
>01_01_0206 - 1770622-1771347
Length = 241
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 382 ITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTIL 489
+ S +R+ P+ D N ++A APA +FA G +L
Sbjct: 40 VMSSWRRLPEPEFDFANAAAADVAPADRLFAGGKLL 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,510
Number of Sequences: 37544
Number of extensions: 279400
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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