Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e05
         (652 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007262-1|AAP35926.1|  686|Homo sapiens cleft lip and palate as...    86   1e-16
BC012359-1|AAH12359.1|  669|Homo sapiens cleft lip and palate as...    86   1e-16
BC004865-1|AAH04865.1|  686|Homo sapiens CLPTM1 protein protein.       86   1e-16
AK223553-1|BAD97273.1|  669|Homo sapiens cleft lip and palate as...    86   1e-16
AF037339-1|AAC98151.1|  669|Homo sapiens cleft lip and palate tr...    86   1e-16
AF037338-1|AAC97420.1|  669|Homo sapiens cleft lip and palate tr...    86   1e-16

>BT007262-1|AAP35926.1|  686|Homo sapiens cleft lip and palate
           associated transmembrane protein 1 protein.
          Length = 686

 Score = 85.8 bits (203), Expect = 1e-16
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = +1

Query: 340 ITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 519
           + K ++ R  +++ I+S FR+  AP+ D   P  APR  + N+F   T+++++ Y+SE E
Sbjct: 55  VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113

Query: 520 FNTNFD-NSNLIWQHSGLVYGDWYSGPNGDGSYSHSASI 633
             T+F+  S L W+   LVYGDW SG N DG Y H A +
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAEL 152


>BC012359-1|AAH12359.1|  669|Homo sapiens cleft lip and palate
           associated transmembrane protein 1 protein.
          Length = 669

 Score = 85.8 bits (203), Expect = 1e-16
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = +1

Query: 340 ITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 519
           + K ++ R  +++ I+S FR+  AP+ D   P  APR  + N+F   T+++++ Y+SE E
Sbjct: 55  VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113

Query: 520 FNTNFD-NSNLIWQHSGLVYGDWYSGPNGDGSYSHSASI 633
             T+F+  S L W+   LVYGDW SG N DG Y H A +
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAEL 152


>BC004865-1|AAH04865.1|  686|Homo sapiens CLPTM1 protein protein.
          Length = 686

 Score = 85.8 bits (203), Expect = 1e-16
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = +1

Query: 340 ITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 519
           + K ++ R  +++ I+S FR+  AP+ D   P  APR  + N+F   T+++++ Y+SE E
Sbjct: 55  VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113

Query: 520 FNTNFD-NSNLIWQHSGLVYGDWYSGPNGDGSYSHSASI 633
             T+F+  S L W+   LVYGDW SG N DG Y H A +
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAEL 152


>AK223553-1|BAD97273.1|  669|Homo sapiens cleft lip and palate
           associated transmembrane protein 1 variant protein.
          Length = 669

 Score = 85.8 bits (203), Expect = 1e-16
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = +1

Query: 340 ITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 519
           + K ++ R  +++ I+S FR+  AP+ D   P  APR  + N+F   T+++++ Y+SE E
Sbjct: 55  VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113

Query: 520 FNTNFD-NSNLIWQHSGLVYGDWYSGPNGDGSYSHSASI 633
             T+F+  S L W+   LVYGDW SG N DG Y H A +
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAEL 152


>AF037339-1|AAC98151.1|  669|Homo sapiens cleft lip and palate
           transmembrane protein 1 protein.
          Length = 669

 Score = 85.8 bits (203), Expect = 1e-16
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = +1

Query: 340 ITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 519
           + K ++ R  +++ I+S FR+  AP+ D   P  APR  + N+F   T+++++ Y+SE E
Sbjct: 55  VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113

Query: 520 FNTNFD-NSNLIWQHSGLVYGDWYSGPNGDGSYSHSASI 633
             T+F+  S L W+   LVYGDW SG N DG Y H A +
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAEL 152


>AF037338-1|AAC97420.1|  669|Homo sapiens cleft lip and palate
           transmembrane protein 1 protein.
          Length = 669

 Score = 85.8 bits (203), Expect = 1e-16
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = +1

Query: 340 ITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 519
           + K ++ R  +++ I+S FR+  AP+ D   P  APR  + N+F   T+++++ Y+SE E
Sbjct: 55  VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113

Query: 520 FNTNFD-NSNLIWQHSGLVYGDWYSGPNGDGSYSHSASI 633
             T+F+  S L W+   LVYGDW SG N DG Y H A +
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAEL 152


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,873,875
Number of Sequences: 237096
Number of extensions: 1599788
Number of successful extensions: 2866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2853
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)