Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e05
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006615-4|AAK68233.2|  602|Caenorhabditis elegans Hypothetical ...    71   5e-13
Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical pr...    67   9e-12
Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    28   6.6  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL022473-1|CAJ43448.1|  339|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    28   6.6  

>AC006615-4|AAK68233.2|  602|Caenorhabditis elegans Hypothetical
           protein C36B7.6 protein.
          Length = 602

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
 Frame = +1

Query: 325 ESFFAITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSAP---RAPAVNMFANGTILDM 495
           +S+ +I   ++ + ++ YFI++M  +    ++  N+ ++A      P+VN+F  G I D 
Sbjct: 22  QSWGSILFGILKQCMMFYFISTMLGKMGGSQSKTNSTAAANVKGMPPSVNLFPPGQIYDF 81

Query: 496 YCYL--SEQEFNTNFDNSNLIWQHSGLVYGDWYSGPNGDGSY 615
           Y YL  SE+ FN +F+N  L  Q  GL YGDW  GPN DGSY
Sbjct: 82  YLYLDDSEERFN-HFENGFLFAQKKGLRYGDWTGGPNKDGSY 122


>Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical
           protein R166.2 protein.
          Length = 618

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
 Frame = +1

Query: 352 LIIRALVVYFITSM----FRQPSAPKTDIN-NPSSAPRA-PAVNMFANGTILDMYCYLSE 513
           +I +A+ +YF+ SM    FR  S+P  D N   S+A     A+NMF N  I D+Y Y+ +
Sbjct: 26  MIKQAITIYFVVSMVSGFFRPSSSPGNDGNVTASTAGNGNKAMNMFPNHQIFDLYVYMDD 85

Query: 514 QEFN-TNFDNS--NLIWQHSGLVYGDWYSGPNGDGSYS-HSASITPSFAL 651
            +     FD++   LIW  +G+ Y DW SG N DGS++ H    TP+  L
Sbjct: 86  SDLPFRQFDSAPEKLIWMRNGMKYDDWISGDNEDGSHTIHKNFPTPAALL 135


>Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical
           protein T22H2.2 protein.
          Length = 527

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +1

Query: 244 SVVAADDNLDINARVEEERRRMQPTKLESFFAITKSLIIRALVVYFITSMFR 399
           S++  DDN D++++      R  PT + ++  +T  ++I +L      S+ R
Sbjct: 195 SLLTDDDNKDVSSKSNTHSERCDPTTIIAYLLLTGLVLITSLPTSLDASVIR 246


>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 532 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPS 642
           F    L WQ    +YGD +   N D    HSAS +P+
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPT 430


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 532 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPS 642
           F    L WQ    +YGD +   N D    HSAS +P+
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPT 430


>AL022473-1|CAJ43448.1|  339|Caenorhabditis elegans Hypothetical
           protein H27C11.1b protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 532 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPS 642
           F    L WQ    +YGD +   N D    HSAS +P+
Sbjct: 298 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPT 330


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 532 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPS 642
           F    L WQ    +YGD +   N D    HSAS +P+
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPT 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,546
Number of Sequences: 27780
Number of extensions: 273317
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)