Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e02
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    68   6e-13
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    28   0.84 
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.9  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   5.9  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   7.8  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 68.1 bits (159), Expect = 6e-13
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
 Frame = +2

Query: 98  GRFPGIVIIIIXAEFCERFSYSGMRAFLTLYLR--------SKLGYTDDGATETYHVFST 253
           G  P    III  E CERF+Y G+      Y++          L   + GA    + F+ 
Sbjct: 79  GTIPWKAFIIIIVELCERFAYYGLTVPFQNYMQFGPKDATPGALNLGESGADGLSNFFTF 138

Query: 254 LXYVFPIIGGILADNYLGKFRTILYMMFVYAAGNILVAITAIPHFALPGRLC--TLIGLF 427
             YV P+   ++AD +LG++ TI+    +Y  G +++  TAIP     G+     ++ L 
Sbjct: 139 WCYVTPVGAALIADQFLGRYNTIVCSAVIYFIGILILTCTAIPSVIDAGKSMGGFVVSLI 198

Query: 428 MITVGTGGIKPCVT 469
           +I +GTGGIK  V+
Sbjct: 199 IIGLGTGGIKSNVS 212


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 104 FPGIVIIIIXAEFCER--FSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPII 277
           FPGI+ +I+   F  +   S +G+  +   ++ +   ++       +++FS   Y FPII
Sbjct: 103 FPGIMHLIVYHFFLRKDYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPII 162


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 417 IRVHNLPGRAKCGIAVIATKMLPA 346
           IRV N P   KCG+ +I +   P+
Sbjct: 407 IRVQNAPSLIKCGVCLIISSTTPS 430


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 173 AFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIGGI 286
           A  T+Y+ +K    ++   E   +   L  +FPI GG+
Sbjct: 10  ALFTVYIGAKWSAQEEEPEEKQLINKRLAVLFPIFGGV 47


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 364 CNNCNTAFRSTWKIMHSDRSVHDNSRHGRHKALRDRF 474
           C    TA   TWK   S+   H+N     +K   D +
Sbjct: 87  CPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPY 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,086
Number of Sequences: 5004
Number of extensions: 40568
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)