Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e02
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical pr...   120   4e-28
AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity...   120   4e-28
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...   115   2e-26
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...   115   2e-26
AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopepti...   111   3e-25
AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide ...   111   3e-25
U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    29   1.7  
Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      27   7.0  

>Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical
           protein C06G8.2 protein.
          Length = 785

 Score =  120 bits (290), Expect = 4e-28
 Identities = 57/127 (44%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
 Frame = +2

Query: 101 RFPGIVIIIIXAEFCERFSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIG 280
           ++P    +I+  E CERFS+ GMRA LTLY  + L ++   +T  +H F+ + Y  P++G
Sbjct: 29  KWPKQTFLIVGNELCERFSFYGMRAVLTLYFFNILNFSQSFSTVLFHAFTVICYSSPLLG 88

Query: 281 GILADNYLGKFRTILYMMFVYAAGNILVAITAI-PHFALPGRLCTLIGLFMITVGTGGIK 457
            ILAD Y+GKF TI ++   YA G IL+A ++I P  +    L  L+GL ++ +GTGGIK
Sbjct: 89  SILADGYIGKFWTIFFISIFYACGQILLAFSSIAPSGSSHHPLLDLLGLLIVGLGTGGIK 148

Query: 458 PCVTAFG 478
           PCV+AFG
Sbjct: 149 PCVSAFG 155


>AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity
           peptide transporter protein.
          Length = 785

 Score =  120 bits (290), Expect = 4e-28
 Identities = 57/127 (44%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
 Frame = +2

Query: 101 RFPGIVIIIIXAEFCERFSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIG 280
           ++P    +I+  E CERFS+ GMRA LTLY  + L ++   +T  +H F+ + Y  P++G
Sbjct: 29  KWPKQTFLIVGNELCERFSFYGMRAVLTLYFFNILNFSQSFSTVLFHAFTVICYSSPLLG 88

Query: 281 GILADNYLGKFRTILYMMFVYAAGNILVAITAI-PHFALPGRLCTLIGLFMITVGTGGIK 457
            ILAD Y+GKF TI ++   YA G IL+A ++I P  +    L  L+GL ++ +GTGGIK
Sbjct: 89  SILADGYIGKFWTIFFISIFYACGQILLAFSSIAPSGSSHHPLLDLLGLLIVGLGTGGIK 148

Query: 458 PCVTAFG 478
           PCV+AFG
Sbjct: 149 PCVSAFG 155


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score =  115 bits (277), Expect = 2e-26
 Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
 Frame = +2

Query: 104 FPGIVIIIIXAEFCERFSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIGG 283
           +P   + I+  EFCERFSY GMR  LT YL + L +TD  +T  ++ F+ L Y  P++G 
Sbjct: 44  WPKTTLCIVSNEFCERFSYYGMRTVLTFYLLNVLKFTDSQSTIFFNGFTVLCYTTPLLGS 103

Query: 284 ILADNYLGKFRTILYMMFVYAAGNILVAITAIPHF-ALPGRLCTLIGLFMITVGTGGIKP 460
           I+AD Y+GKF TI  +  +YA G +++A+ +  +F +       L GL +I  GTGGIKP
Sbjct: 104 IVADGYIGKFWTIFSVSILYAIGQVVLALASTKNFQSSVHPWMDLSGLLIIAFGTGGIKP 163

Query: 461 CVTAFG 478
           CV+AFG
Sbjct: 164 CVSAFG 169


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score =  115 bits (277), Expect = 2e-26
 Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
 Frame = +2

Query: 104 FPGIVIIIIXAEFCERFSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIGG 283
           +P   + I+  EFCERFSY GMR  LT YL + L +TD  +T  ++ F+ L Y  P++G 
Sbjct: 5   WPKTTLCIVSNEFCERFSYYGMRTVLTFYLLNVLKFTDSQSTIFFNGFTVLCYTTPLLGS 64

Query: 284 ILADNYLGKFRTILYMMFVYAAGNILVAITAIPHF-ALPGRLCTLIGLFMITVGTGGIKP 460
           I+AD Y+GKF TI  +  +YA G +++A+ +  +F +       L GL +I  GTGGIKP
Sbjct: 65  IVADGYIGKFWTIFSVSILYAIGQVVLALASTKNFQSSVHPWMDLSGLLIIAFGTGGIKP 124

Query: 461 CVTAFG 478
           CV+AFG
Sbjct: 125 CVSAFG 130


>AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopeptide
           symporter OPT-3 protein.
          Length = 701

 Score =  111 bits (267), Expect = 3e-25
 Identities = 51/125 (40%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
 Frame = +2

Query: 104 FPGIVIIIIXAEFCERFSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIGG 283
           +P  V  ++  EFCERFS+ GM+  L +YL ++  ++   AT  YH+F+ + Y+ P+IG 
Sbjct: 13  YPPAVFFMLGNEFCERFSFYGMKTILFIYLITEHEFSPSKATFIYHLFTCIAYLTPLIGS 72

Query: 284 ILADNYLGKFRTILYMMFVYAAGNILVAITAIPHFALPGR-LCTLIGLFMITVGTGGIKP 460
           I+AD+  G+F+ ILY   +Y  G++L+++ A+P  + P R      GLF+I   TG IKP
Sbjct: 73  IMADSVFGRFKVILYGSSIYVVGHVLLSLGAVPFLSYPIRSSLDFSGLFVIAFATGCIKP 132

Query: 461 CVTAF 475
           CV+AF
Sbjct: 133 CVSAF 137


>AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide
           transporter protein 3 protein.
          Length = 701

 Score =  111 bits (267), Expect = 3e-25
 Identities = 51/125 (40%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
 Frame = +2

Query: 104 FPGIVIIIIXAEFCERFSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIGG 283
           +P  V  ++  EFCERFS+ GM+  L +YL ++  ++   AT  YH+F+ + Y+ P+IG 
Sbjct: 13  YPPAVFFMLGNEFCERFSFYGMKTILFIYLITEHEFSPSKATFIYHLFTCIAYLTPLIGS 72

Query: 284 ILADNYLGKFRTILYMMFVYAAGNILVAITAIPHFALPGR-LCTLIGLFMITVGTGGIKP 460
           I+AD+  G+F+ ILY   +Y  G++L+++ A+P  + P R      GLF+I   TG IKP
Sbjct: 73  IMADSVFGRFKVILYGSSIYVVGHVLLSLGAVPFLSYPIRSSLDFSGLFVIAFATGCIKP 132

Query: 461 CVTAF 475
           CV+AF
Sbjct: 133 CVSAF 137


>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 287 LADNYLGKFRTILYMMF--VYAAGNILVAITAIPHFALPGRLCTLIGL 424
           + D  L   + ++Y++F  +   GN+ + I    + +L  R C LIG+
Sbjct: 1   MVDPLLSLLKIVVYIIFATIGVFGNLAIVIITFKYKSLQSRCCVLIGI 48


>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 376 CSYCNQNVTCRIHEHHIQNCPEFSKVIIS 290
           CS+CN+ +     E H + CP+   VIIS
Sbjct: 137 CSFCNKTIRDSDRERHPKTCPQ---VIIS 162


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 376 CSYCNQNVTCRIHEHHIQNCPEFSKVIIS 290
           CS+CN+ +     E H + CP+   VIIS
Sbjct: 137 CSFCNKTIRDSDRERHPKTCPQ---VIIS 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,090,997
Number of Sequences: 27780
Number of extensions: 225768
Number of successful extensions: 563
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)