Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6e01
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 0.10
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 24 3.8
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 24 3.8
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 24 3.8
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 24 3.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 5.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 5.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 5.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 5.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 5.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 23 5.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 5.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 5.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 5.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 5.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 5.1
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 23 5.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 5.1
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 23 6.7
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 23 6.7
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 23 8.8
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.10
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -2
Query: 154 PSPKTETMQYIVLFSQRTVHEPSVVLSQ*QEELVCSPAPFFCSIVQVTTY 5
P T ++++QR + P VL E VC P+PF ++ Y
Sbjct: 215 PKEALRTRGLAIVWNQRWKNSPESVLKARSEITVCKPSPFHPQLIAGGAY 264
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 133 LSQSLGLAYNMDLLYSFTGLKSLL 204
L LGL Y ++L SF+ L SLL
Sbjct: 132 LLSELGLNYEIELPNSFSNLTSLL 155
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 112 RIKLCTALSQSLGLAYNMDLLYSFTGLKSLL*Y 210
R+ + A GLA+ ++ +Y F LKS L Y
Sbjct: 36 RLLIAIACIIPAGLAFGIEYVYGFGVLKSYLKY 68
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 52 IQVLLVIGITLLMAHARSVGRIKLCTALSQSLG 150
IQ + G +LMA S G+ + ++QSLG
Sbjct: 58 IQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLG 90
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 23.8 bits (49), Expect = 3.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3
Query: 135 QCST*FYSPNGPCMSH 88
+C T F P GPC H
Sbjct: 301 RCGTRFADPRGPCTYH 316
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 42 AGLHTSSSCYWDNTTDGSCTVRWEN 116
AGL T+S NTT + TV EN
Sbjct: 763 AGLDTASQITSKNTTTNTTTVTTEN 787
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 62 RTCMQSCTILLQYCAGHYIF 3
RT + SC ++ Y +YIF
Sbjct: 350 RTILGSCVLIFTYFMSYYIF 369
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 197 DFKPVNEYNKSMLYAKP 147
D+KP+N+Y K +Y P
Sbjct: 467 DYKPLNKYVKPNIYPLP 483
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 23.0 bits (47), Expect = 6.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 43 QDCIQVLLVIGITLLMAHARSVGRIKLCTALSQSLGLAYNM 165
Q CI +LL+ + LL ++ KL ++ +GLAY +
Sbjct: 25 QVCIPLLLLTALVLLHNFVITLINSKLQINVAHLVGLAYQI 65
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 18 CTI-LQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYC 131
C I LQK+G S C D D SC RW ++++ C
Sbjct: 21 CVICLQKDGLRAQLSP-CGHDQF-DYSCICRWMDQSLTC 57
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 169 NPCYMPSPKTETMQYIVLFSQRTVHEP 89
NP MPS ETMQ I+ + ++P
Sbjct: 434 NPISMPSNLIETMQRILRGMELRSYQP 460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,485
Number of Sequences: 5004
Number of extensions: 20089
Number of successful extensions: 58
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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