Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6e01
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0486 - 18634813-18635168,18635258-18638726 28 1.2
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 27 2.1
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 27 2.7
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 27 2.7
07_01_1041 - 9060041-9060211,9060501-9060655,9061598-9061676 26 4.8
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 26 4.8
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 25 6.3
12_01_1008 - 10238721-10238777,10238889-10239307,10240418-102405... 25 8.4
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 25 8.4
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 25 8.4
>07_03_0486 - 18634813-18635168,18635258-18638726
Length = 1274
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 58 VLLVIGITLLMAHARSVGRIKLCTALSQSLG 150
VLLVI + L+ R G + CTA S SLG
Sbjct: 899 VLLVIVLVLIAVRRRRSGEVN-CTAFSSSLG 928
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 72 NNKKNLYAVLHHSSAVLCRSL 10
+N+ L AV HH SA+LC SL
Sbjct: 766 SNESILKAVWHHPSAILCCSL 786
>04_01_0150 +
1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 178 NIINPCYMPSPKTETMQYIVLFSQRTVHEPS 86
N I C+ PSP T+T+Q I + S V PS
Sbjct: 518 NTIEECFTPSPVTQTVQPIQVASPH-VTSPS 547
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 166 PCYMPSPKTETMQYIVL--FSQRTVHEPSVVLS 74
PC+ PSP+ +T+ + +L QR HE ++ L+
Sbjct: 525 PCFEPSPQAQTILHCLLRHLLQRDKHEEALRLA 557
>07_01_1041 - 9060041-9060211,9060501-9060655,9061598-9061676
Length = 134
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 27 LQKNGAGLHTSSSCYWD 77
+QKN + + S++CYW+
Sbjct: 104 IQKNASAMRISATCYWN 120
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 81 TTDGSCTVRWENKTMYCIVSV 143
TTDG C R NK IVSV
Sbjct: 696 TTDGMCEPRTPNKMQMAIVSV 716
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 49 CIQVLLVIGITLLMAHARSVGRIKLCTALSQSLGLAYN---MDLLYSFT 186
C+++LL GI L+ H +GR K+ L SL L + + ++++FT
Sbjct: 243 CLELLLQSGIELMGKHVTVIGRSKV-VGLPTSLLLQRHHATVSIIHAFT 290
>12_01_1008 -
10238721-10238777,10238889-10239307,10240418-10240548,
10240678-10240781,10241299-10241739
Length = 383
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 34 RMVQDCIQVLLVIGITLLMAHARSVGRIKLCTALSQSLGLAYNMDLLYSFTG 189
+++ D + L +G+T A+ V + T L + LG AYN +YS +G
Sbjct: 267 KLILDFMNYLQGLGMT-----AQDVASLNQLTRLKRLLGNAYNYLTMYSQSG 313
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 12 VTCTILQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMY-CIVS 140
V T K+G L T C++ N C + NK Y CI +
Sbjct: 188 VLATRYLKSGESLETGKKCHFPNYLIEICEAKSVNKGCYFCIAN 231
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 60 SSCYWDNTTDGSCTVRWENKTMYCIVSV 143
S C +T +G C V W T Y SV
Sbjct: 659 SGCVMQDTPNGYCKVTWVEHTEYDEASV 686
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,772,022
Number of Sequences: 37544
Number of extensions: 122846
Number of successful extensions: 309
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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