Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e01
         (260 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    51   1e-07
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    38   0.001
AF478687-1|AAL78657.1|  776|Caenorhabditis elegans systemic RNAi...    27   2.4  
AF101305-9|AAF98593.3|  776|Caenorhabditis elegans Systemic rna ...    27   2.4  
AC087081-8|AAY55899.1|  499|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +3

Query: 3   KYVVTCTILQ-KNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 143
           KYVVT + LQ  +G+GL+ S+  YW+  TD S   RWE KTM  IV V
Sbjct: 54  KYVVTSSFLQISSGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYV 101


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 3   KYVVTCTILQKNGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 143
           KYV+   I ++ G G  T+  C WD   DG  T R+   +++C V V
Sbjct: 71  KYVIQTMIAEQCGNGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLV 117


>AF478687-1|AAL78657.1|  776|Caenorhabditis elegans systemic RNAi
           enabling proteinSID-1 protein.
          Length = 776

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 19  AQYCRRMVQDCIQVLLVIGITLLMAHARSVGRIKLCTALS 138
           A YC   + +CI  L+  G   ++   R   + KLC ALS
Sbjct: 662 ATYC--FIINCIMYLMYYGCMKVLHSERITSKAKLCGALS 699


>AF101305-9|AAF98593.3|  776|Caenorhabditis elegans Systemic rna
           interference defectiveprotein 1 protein.
          Length = 776

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 19  AQYCRRMVQDCIQVLLVIGITLLMAHARSVGRIKLCTALS 138
           A YC   + +CI  L+  G   ++   R   + KLC ALS
Sbjct: 662 ATYC--FIINCIMYLMYYGCMKVLHSERITSKAKLCGALS 699


>AC087081-8|AAY55899.1|  499|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.18 protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 121 VLFSQRTVHEPSVVLSQ*QEELVCSPAPFFCS 26
           VL ++R VH   +V    + + +CS  PFF +
Sbjct: 328 VLKAKRRVHVKKIVFENFRFQSICSILPFFAA 359


>Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.12 protein.
          Length = 307

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 25  YCRRMVQDCIQVLLVIGIT 81
           YC+ ++QDC+ VL +I  T
Sbjct: 222 YCQTVLQDCLHVLDMINST 240


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 51  HTSSSCYWDNTTDGSCTVRW 110
           +  S  Y  N TDG+CT  W
Sbjct: 345 YPESLLYNPNVTDGACTYEW 364


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 102 PCMSHQ*CYPNNKKNLYAVLHHSSAVLCRSLHIC 1
           PC SH  C PN+ + L +     +AV C    IC
Sbjct: 338 PCPSHAACIPNSNETLSS----CAAVTCPVGEIC 367


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 102 PCMSHQ*CYPNNKKNLYAVLHHSSAVLCRSLHIC 1
           PC SH  C PN+ + L +     +AV C    IC
Sbjct: 403 PCPSHAACIPNSNETLSS----CAAVTCPVGEIC 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,100,240
Number of Sequences: 27780
Number of extensions: 117016
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)