Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6e01
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   4.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   5.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 122 YVLHCLSLWAWHITWIYYIHLLA*NLFY 205
           Y    LS W    T IYYI +LA  LFY
Sbjct: 102 YATCVLSCW----TNIYYIIILAWALFY 125


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 122 YVLHCLSLWAWHITWIYYIHLLA*NLFY 205
           Y    LS W    T IYYI +LA  LFY
Sbjct: 155 YATCVLSCW----TNIYYIIILAWALFY 178


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 52  IQVLLVIGITLLMAHARSVGRIKLCTALSQSLGL 153
           + VLLV  + L++      G I +C A+    GL
Sbjct: 23  LSVLLVGFLFLILIFLSVAGNILVCVAIYTDRGL 56


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 166 PCYMPSPKTE 137
           PC +P PK+E
Sbjct: 627 PCLLPRPKSE 636


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 166 PCYMPSPKTE 137
           PC +P PK+E
Sbjct: 595 PCLLPRPKSE 604


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 42  AGLHTSSSCYW 74
           A L T  SCYW
Sbjct: 134 ACLSTGGSCYW 144


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +2

Query: 152 WHITWIYYIHL 184
           WH  WI ++ L
Sbjct: 2   WHFLWIVFLAL 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,795
Number of Sequences: 438
Number of extensions: 1656
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)