Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6d21
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    77   2e-15
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    59   6e-10
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    53   3e-08
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    31   0.11 
SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.77 
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   4.1  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    26   5.4  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   7.2  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    25   9.5  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
 Frame = +3

Query: 162 RILIDHDGGADDSLAIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRR 341
           +I+ID D G DD++    A+   E     +++G+TT  GNV       N+ ++L +A R 
Sbjct: 2   KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57

Query: 342 DVPIYRGCSEPLIGGSVSDFYFGNDGLGDHENVEYQSIAAEKEHAVFRIIE-LSKLYPGN 518
           D+P+Y G ++PL+   ++  +       +   +   S    + HAV  II+ L    PG 
Sbjct: 58  DIPVYAGSNKPLLRAPITATHVHGASGFEGAVLPPPSRKENEGHAVDFIIDTLRNNEPGT 117

Query: 519 LEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAG 620
           + I  IGPLTNIA+A+   P  + R  ++V+ AG
Sbjct: 118 ITICTIGPLTNIALALNKAPEVIQRAKQIVMMAG 151


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
 Frame = +3

Query: 165 ILIDHDGGADDSLAIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRRD 344
           I ID D G DD +A+  A          K++G++T HGN   +    N+  ++ + N+ D
Sbjct: 19  IWIDCDPGHDDVVALTLAACAGHC----KILGVSTVHGNTTLEFTTKNALAVMELLNQ-D 73

Query: 345 VPIYRGCSEPLIGGSV-SDFYFGNDGLGDHENV-EYQSIAAEKEHAVFRIIELSKLYPGN 518
           V ++ G ++PL+  S  +    G +GL     + +Y    A  + AVF +      YP  
Sbjct: 74  VDVHAGAAKPLMRESAFATHIHGTNGLAGISLLPDYPKKKATPD-AVFAMYTTISNYPEP 132

Query: 519 LEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAG 620
           + ++A GPLTNIA+ +   P     + R +   G
Sbjct: 133 VTLVATGPLTNIALLLATYPSVTDNIERFIFMGG 166


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
 Frame = +3

Query: 159 ARILIDHDGGADDSLAIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANR 338
           ++++ID+DG  D  L +  AL  +++     ++G+T  +G+   D     +  +L   N 
Sbjct: 25  SKVIIDNDGLTD--LQVLFALQAKQQ-----ILGVTAIYGDYTLDDSLFLASDVLSTGNL 77

Query: 339 RD-VPIYRGCSEPLIGGS----VSDFYFGNDGLGDHENVEYQSIAAEKEHAVFR------ 485
              +P + G ++PL+  +    +    +G+     +   EY++     E  ++       
Sbjct: 78  TYCIPSFAGAAQPLLRTNNTFQIWQELYGSYVWQGYWQPEYETANTNNESYIYNTQISAA 137

Query: 486 --IIELSKLYPGNLEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAGYIYS 632
             II++ K  P  + I+A GP+TN+A+A+ I P        LVI  GY+ S
Sbjct: 138 QFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDS 188


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 24/72 (33%), Positives = 34/72 (47%)
 Frame = +3

Query: 330 ANRRDVPIYRGCSEPLIGGSVSDFYFGNDGLGDHENVEYQSIAAEKEHAVFRIIELSKLY 509
           AN   +PI  GC  P + GS    Y  ND  G    +  +S        V  I+EL ++Y
Sbjct: 554 ANGLTIPIVHGCKRPAMPGS----YQSNDVFGFPLQLNVRSRNVLTNDLVKEIVELYRVY 609

Query: 510 PGNLEIIAIGPL 545
            G ++ +AIG L
Sbjct: 610 AG-ID-VAIGTL 619


>SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 89

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = -1

Query: 622 YPAPITRRDSRLRKNGSIFTAIAILVKGPIAIISKLPGYNFDSSIIRKTACSFSAAML 449
           +PAP+ +++ R +      + + +L KGPI  +S +   ++ +  I    C F  + +
Sbjct: 15  FPAPLEKKEKREKGKIRNISFLIVLTKGPIWKVSSMESTSY-NGCIENLDCKFRKSFI 71


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 207 IFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGCSEPLIGG 386
           + +ALL  +KF GP V+     + + ++D + V  Q      +    P+YR  +  L  G
Sbjct: 599 LISALLEADKFKGPSVVLAYLPYHSADDDAITV-LQETKKAVDIGYWPLYR-WTPALEDG 656

Query: 387 SVSDF 401
             SDF
Sbjct: 657 EYSDF 661


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -3

Query: 242 IEFLLIQQRCEYR*RIIGTSVVVNEDSGFGDVINSS---FRFTAFFAKNQP 99
           ++ +L QQ CE    ++G ++ + E  G+ + I+ +    R+ AFF+KN P
Sbjct: 66  VKAVLFQQLCEV---VVGIALAMFE--GYPEPIDEAKQMLRYEAFFSKNLP 111


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 581 KRINFHSHSNISQGTNSDY 525
           ++ NFH HS  + G N +Y
Sbjct: 298 RKFNFHHHSRKNSGLNEEY 316


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 238 NFSSYSSAVNIAKESSAPPSWSMRILASVTSLIRAS--DLQLFLPKINHPDKANAKK 74
           ++ S SS+ N +KE ++P  + +    S  +   A+  D  + LPKIN PD + + K
Sbjct: 51  SYDSPSSSTN-SKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSSK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,585
Number of Sequences: 5004
Number of extensions: 51161
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)