Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6d21
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 91 9e-19
03_04_0131 - 17551438-17551549,17552080-17552215,17552361-175524... 81 8e-16
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 79 2e-15
09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361... 30 1.8
09_02_0051 - 3606453-3606473,3606562-3606957,3608250-3608419,360... 30 1.8
01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405 30 1.8
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 3.2
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 29 4.2
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 28 5.6
11_01_0105 - 786623-787091,787229-787333,787476-787864 28 7.4
>08_02_1567 -
27916010-27916118,27916256-27916391,27916675-27916771,
27916866-27916970,27917058-27917240,27917764-27917823,
27917909-27918096,27919234-27919294
Length = 312
Score = 90.6 bits (215), Expect = 9e-19
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Frame = +3
Query: 192 DDSLAIFTALLYEEKFNGP--KVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGC 365
DDS+ I A F P ++IGLTT GN N+ + A +VP+ G
Sbjct: 45 DDSMTILMA------FRAPTVEIIGLTTIFGNTTTKNATQNALLLCERAGHPEVPVAEGS 98
Query: 366 SEPLIGGS--VSDFYFGNDGLGDHENVEYQSIAAEKEHAVFRIIELSKLYPGNLEIIAIG 539
+EPL GG V+DF G+DGLG+ S ++ A F + ++S+ +PG + I+A+G
Sbjct: 99 AEPLKGGEPRVADFVHGSDGLGNLFLPAPTSKKVDENAAEFMVNKVSQ-FPGEVSILALG 157
Query: 540 PLTNIAMAVKIDPFFLSRLSRLVIGAGYIYS 632
PLTN+A+A+K DP F S++ ++V+ G ++
Sbjct: 158 PLTNVALAIKRDPSFASKVKKIVVLGGAFFA 188
>03_04_0131 -
17551438-17551549,17552080-17552215,17552361-17552468,
17552803-17552899,17553003-17553107,17553207-17553392,
17553679-17553738,17553883-17553990
Length = 303
Score = 81.0 bits (191), Expect = 8e-16
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Frame = +3
Query: 201 LAIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGCSEPLI 380
+AIF AL E +++GLTT GNV N+ +L R D+P+ G +
Sbjct: 1 MAIFVALRSPEV----ELLGLTTIFGNVYTTLATRNALHLLEAVGRTDIPVAEGSHVTIK 56
Query: 381 GGS---VSDFYFGNDGLGDHENVEYQSIAAEKEHAVFRIIELSKLYPGNLEIIAIGPLTN 551
+ ++ F G+DGLG+ ++ A F ++E + LYPG + ++A+GPLTN
Sbjct: 57 KATKLRIASFVHGSDGLGNQNFPPPTGKPLDQSAAAF-LVEQANLYPGQVTVVALGPLTN 115
Query: 552 IAMAVKIDPFFLSRLSRLVIGAG 620
+A+A+++DP F ++ ++VI G
Sbjct: 116 LALAIELDPSFPKKIGQIVILGG 138
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 79.4 bits (187), Expect = 2e-15
Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 7/167 (4%)
Frame = +3
Query: 153 TEARILIDHDGGADDSLAIFTALLYEE-KFNGPKVIGLTTTHGNVNEDQVYVNSQRILGV 329
TE +++ID D G + I LL P ++ +T ++ ++ + + GV
Sbjct: 19 TEEKVIIDTDPGIGTLILISPLLLPASVTVIHPSILTITNSYQFPDDSVAIMMAFEAPGV 78
Query: 330 ----ANRRDVPIYRGCSEPLIGGS--VSDFYFGNDGLGDHENVEYQSIAAEKEHAVFRII 491
A R +VP+ G +EPL GG V+DF G+DGLG+ + + ++ A ++
Sbjct: 79 KCDRAGRPEVPVAEGSAEPLKGGKPHVADFVHGSDGLGNTSFPDPTTTNKVEQSAAEFLV 138
Query: 492 ELSKLYPGNLEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAGYIYS 632
+ PG + ++A+GPLTNIA+A+K D F S++ R+V+ G ++
Sbjct: 139 DKVSESPGEISVLALGPLTNIALAMKKDSSFASKVKRIVVLGGAFFA 185
>09_02_0052 -
3616013-3616033,3616116-3616514,3617925-3618094,
3619691-3620732
Length = 543
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 279 NVNEDQVYVNSQRILGVANRRDVPI-YRGCSEP--LIGGSVSDFYFGND 416
NVN +++ R + R ++P+ RG ++P L+ S+ DFYFG++
Sbjct: 174 NVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDN 222
>09_02_0051 -
3606453-3606473,3606562-3606957,3608250-3608419,
3609654-3610707
Length = 546
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 279 NVNEDQVYVNSQRILGVANRRDVPI-YRGCSEP--LIGGSVSDFYFGND 416
NVN +++ R + R ++P+ RG ++P L+ S+ DFYFG++
Sbjct: 178 NVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDN 226
>01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405
Length = 699
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3
Query: 297 VYVNSQRILGVANRRD------VPIYRGCSEPLIGGSVSDFYFGNDGLGDHENVE 443
+Y +SQ GV+N R+ V GCS +GG V +F+ G H+ +E
Sbjct: 539 IYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIE 593
>02_05_0220 -
26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 477 VFRIIELSKLYPGNLEII--AIGPLTNIAMAVKIDPFFLSRLSRLVIGAGYIYSDD 638
+FRII L+ +PGN E + A GP + ++ + L LSRL G I SD+
Sbjct: 630 IFRIISLATQHPGNKEELCRAHGP----ELLSQVLHYLLETLSRLESGEKEILSDE 681
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 547 VKGPIAIISKLPGYNFDSS 491
VKGPI +S+LP +N+D S
Sbjct: 40 VKGPITDVSQLPKWNYDGS 58
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +3
Query: 354 YRGCSE-PLIGGSVSDFYFGNDGLGDHENVEYQSIAAEKEHAVFRIIELSKLYPGN---L 521
YR CS L+ S S + G G + + AA H RI+ L L+P + +
Sbjct: 450 YRNCSICTLVSTSRSLRFHGGGGAASSSSSTATAAAAMIHHLQRRIVSLLLLHPASPHPV 509
Query: 522 EIIAIGPLTNIAMAVKIDPF 581
I++G L + V PF
Sbjct: 510 AAISLGRLLSTTAPVSSKPF 529
>11_01_0105 - 786623-787091,787229-787333,787476-787864
Length = 320
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -2
Query: 444 IQRSHDLPDHRFQSRSH*QNLQLV----AQSSLCRSVHLFCSPHPIFFDCLRKLDL 289
++ S D QS S +LQ SS C ++ + CSP + DC + LD+
Sbjct: 228 VEASQISTDSHCQSPSSSSDLQAAEVHAGNSSQCSNISVTCSPSVVVEDCNKLLDM 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,264,639
Number of Sequences: 37544
Number of extensions: 312135
Number of successful extensions: 772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -