Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6d12
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   1.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.1  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    27   2.8  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   3.7  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   4.9  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   4.9  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   4.9  

>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 78  IIYIYINTYPYRLITSITTRIRYIPSNIVTRYLNKLFPK 194
           +IY+    Y Y  + S++++ R      V  Y NK FP+
Sbjct: 49  LIYLLYCWYIYSEVPSVSSKFRSFTFGCVVVYHNKFFPR 87


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 613 TGHRCLCRGCGSHGDRAHITVPCSNDITVTIRYLR*VSNI 494
           TG RCL +GC       HI   CS DI   I  L+  +N+
Sbjct: 754 TGWRCLPKGCD-----YHILKECSLDINFEISILQKATNL 788


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 74  WNYIYIHKYVSVQIDNFDN 130
           W YI +HK   V I +FDN
Sbjct: 17  WGYIDVHKIKEVHIYDFDN 35


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 407 PTKTITNLNERKCYAIFVSNFISNM*IFLVPQNVTNRLLRRFQFT 273
           PTK ITN+N+ K      +N++ N+    +P  V N  +   Q++
Sbjct: 392 PTKIITNINKLKRNYTITNNWLENL-QQKIPSEVDNGKVSGLQYS 435


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 41  ILGPLPFLTYFWNY 82
           IL  +PFL YFW+Y
Sbjct: 222 ILFSIPFLAYFWSY 235


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 78  IIYIYINTYPYRLITSITTRIRYIPSNIVTRYLNKLFPK 194
           +IY+    Y Y  + S +++ R      V  Y NK FP+
Sbjct: 49  LIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPR 87


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 78  IIYIYINTYPYRLITSITTRIRYIPSNIVTRYLNKLFPK 194
           +IY+    Y Y  + S +++ R      V  Y NK FP+
Sbjct: 49  LIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPR 87


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 78  IIYIYINTYPYRLITSITTRIRYIPSNIVTRYLNKLFPK 194
           +IY+    Y Y  + S +++ R      V  Y NK FP+
Sbjct: 49  LIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPR 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,596
Number of Sequences: 5004
Number of extensions: 45254
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)