Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6d12
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-10|CAA21037.2|  492|Caenorhabditis elegans Hypothetical...    30   1.5  
AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical ...    29   3.5  

>AL031635-10|CAA21037.2|  492|Caenorhabditis elegans Hypothetical
           protein Y47D3B.4 protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
 Frame = +2

Query: 53  LPFLTYFWNYIYIHKYV-SVQID------NFDNYSNSIHPLE 157
           LP+   F+NYI+ H+YV  + ID       FDNY + +   E
Sbjct: 315 LPYNDCFYNYIHTHRYVLIIDIDEVIVPIQFDNYGDLLRDFE 356


>AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical
           protein F52F10.4 protein.
          Length = 692

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 53  LPFLTYFWNYIYIHKYVSV 109
           L F TYFWN++ ++ +VSV
Sbjct: 278 LDFPTYFWNHLLLNAFVSV 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,449
Number of Sequences: 27780
Number of extensions: 253555
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)