Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6d12
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.2  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 139 IRVVIEVINLYGYVFMYIYIIP 74
           IR+V+ ++   GYV ++I  +P
Sbjct: 55  IRIVLVILLRAGYVLIHIGSVP 76


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 451 PSTSEIERFL*DRRPPPKQLQT*TKENATLFLFQTLFRTCKY 326
           P+  +IE+FL   +   K L + + E+ T+F+    F   KY
Sbjct: 310 PNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKFLKQKY 351


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 380 ERKCYAIFVSNFISNM*IFLVPQNVTNRLLRRFQFTQEI 264
           ERK  +   +N+ISN+  +    N   +L     + ++I
Sbjct: 78  ERKIISSLSNNYISNISNYNNDNNYNKKLYYNINYIEQI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,520
Number of Sequences: 438
Number of extensions: 3509
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)