Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6d08
         (569 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    33   0.002
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   3.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.2  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   5.6  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   7.4  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   7.4  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   7.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.8  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 3   FVLLLTKGVNVCLKYYFINDDIPNRVLN-KMWNYSDFCLMCILM 131
           F++L    V V L YY   D+ PN V N K++N++ F  + IL+
Sbjct: 324 FIILFYLSVFVILVYYASLDETPNPVTNGKLYNFNTFAKLLILV 367


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 461  VNMSPAEISIAPTAATFRYPNRRSN 387
            ++++P  +S A  +   RYPN ++N
Sbjct: 1426 MSIAPNRVSQARPSVQLRYPNGKAN 1450


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 461  VNMSPAEISIAPTAATFRYPNRRSN 387
            ++++P  +S A  +   RYPN ++N
Sbjct: 1426 MSIAPNRVSQARPSVQLRYPNGKAN 1450


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -1

Query: 347 LSIITKVPCVGVKPVSSNASWNTRPKLLMRGRTTTLFKAYANVMTHPYPP 198
           LS++ K       P   N   N RPKLL++     L      ++   Y P
Sbjct: 88  LSVLHKCYDYDAIPWLQNVEPNLRPKLLLKHNLFLLDNIVKPIIAFYYKP 137


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 336 YNTQS*YWNVVVVLWRTIT 392
           Y T S  W+  V+LW  +T
Sbjct: 671 YTTYSDVWSFGVLLWEIVT 689


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +3

Query: 75  RVLNKMWNYSDFCLMCI 125
           R  N+++ +  FC +C+
Sbjct: 11  RASNQLFRFGQFCAICV 27


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 438 KYSPDGSYF 412
           KY PDG YF
Sbjct: 102 KYDPDGIYF 110


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 158 PRCLTHLRTRCLQTEDTDGSS 220
           PR L  LRT+C + + T  S+
Sbjct: 85  PRALRRLRTQCERAKRTLSSA 105


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 158 PRCLTHLRTRCLQTEDTDGSS 220
           PR L  LRT+C + + T  S+
Sbjct: 85  PRALRRLRTQCERAKRTLSSA 105


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -3

Query: 231 IRECDDPSVSSVWR 190
           +R C++P+    WR
Sbjct: 234 VRRCEEPTEEKPWR 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,950
Number of Sequences: 336
Number of extensions: 2933
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)