Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6d08
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    30   0.27 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    29   0.48 
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    28   1.1  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    27   1.9  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   3.4  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   3.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   5.9  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   5.9  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   5.9  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   7.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.8  

>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 322 QGTLVIILNH--SIGMLLSFFGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFIL 495
           QG LV ++N   ++G LLS    PL  RFG RK      ++   G+I+       WV ++
Sbjct: 58  QGLLVGMVNTGTTVGCLLS---SPLGDRFGKRKCIMGWTLVYITGVIVQLTTIPSWVQMM 114

Query: 496 SYSILNSMGVASV 534
              I   +G+ ++
Sbjct: 115 VAKIWTGLGIGAL 127


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 373 FFGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSILN--SMGVASVMA 540
           F   PL+ R G R       I+   G+IL   A   WV I+   I    S+G  SV+A
Sbjct: 74  FLSSPLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWTGLSIGALSVLA 131


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 23/104 (22%), Positives = 41/104 (39%)
 Frame = +1

Query: 211 WVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHSIGMLLSFFGGPL 390
           W I F + L  + V+   + FG +      +  ++    TL + +N     L   F GPL
Sbjct: 81  WSIVFMFCLMQIYVIWTSNGFGSIEYSVMAQFNVSAQVATLCLSMNILGSGLGPMFLGPL 140

Query: 391 LRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSILNSMG 522
               G + V      + +   I  +L  +    I+S+ I+   G
Sbjct: 141 SDIGGRKPVYFCSIFVYTVFNISCALPRNIVQMIISHFIIGVAG 184


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 202 GYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHS 354
           GY     FA++ + +VV+   S+FG    E   ET +      LVI++N++
Sbjct: 427 GYAIASAFAHSSDKIVVVEGDSAFGFSAMEL--ETAIRNQLDLLVIVINNN 475


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 175 PAYKVPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLV 336
           P  +  PD  Y  V  FAY   +   +   S F ++F++  +ET   PT+ +++
Sbjct: 708 PLEEFSPDTSYSLVNAFAYCDRDKKNVRNCS-FTVIFRDGSEETLCAPTEESMI 760


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 205 YGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLT 315
           + WV TF   +    VLP+++ + +   EA  + G T
Sbjct: 327 FNWVHTFRLRIYGPAVLPMLALYIVNMMEAIGDIGAT 363


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = -1

Query: 434 IAPTAATFR----YPNRRSNGPPKNDNNIPIL*LSIITKVPCVGVKPVSSNASWNTRPKL 267
           + PT+AT      YP+R +  PP + ++ P+  LS  T      VK  +SNAS    P L
Sbjct: 239 LQPTSATSSSSRLYPSRPAPTPPASSSSSPL--LSSQT------VKTTTSNASRQPSP-L 289

Query: 266 LMRGRTTTLFKAYANVMTHP 207
           +    T  + ++++ V+  P
Sbjct: 290 VSSKSTDNIIRSHSPVLLTP 309


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +1

Query: 322 QGTLVIILNHSIGMLLSFFGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSY 501
           QG +  ++N    M       PL+ R G R       I+   G+IL   A   WV I+  
Sbjct: 58  QGLITGMVNVG-SMTGCILSSPLMDRIGKRVSIMFWTIVYLIGIILQVTAVPSWVQIMVA 116

Query: 502 SILN--SMGVASVMA 540
            I    ++G  SV+A
Sbjct: 117 KIWTGLAIGALSVLA 131


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 237 QSIRECDDPSVSSV-WRHLVRRCVRHLGTFTTLQITSLKYTLNKNHCNSTFY 85
           + I + +DP + S+ WR      V  +    T     LKYT    HC  TFY
Sbjct: 773 KKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRN-RMLKYTPEHMHCFGTFY 823


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 389 NGPPKNDNNIPIL*LSIITKVPCVGVK-PVSSNASWNTRPKLLMRGRTT 246
           N  P NDNN  I  LSI +  P +     V S AS    P +    RTT
Sbjct: 100 NNIPPNDNNYSISDLSIKSPPPSLTSDWIVDSYASDQDNPSVHTHNRTT 148


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 129 LKYTLNKNHCNSTFYLVLC*VCR 61
           ++Y L+  HC S FYL +  +C+
Sbjct: 460 IQYVLSNCHCLSAFYLCMPSLCQ 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,140
Number of Sequences: 5004
Number of extensions: 47879
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)