Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6d08
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551...    29   3.4  
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    28   4.6  
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    28   6.0  
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345...    28   6.0  

>12_02_1110 +
           26154024-26154314,26154400-26154944,26155023-26155109,
           26155237-26155293,26155369-26155607,26155715-26155833,
           26155945-26156031,26156117-26156194
          Length = 500

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 337 IILNHSIGMLLSF---FGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSI 507
           ++L  +  ++++F   + GP LR  G     A    L + GL+   LA  F +F      
Sbjct: 128 LVLQFATAIVIAFLYWYAGPFLRLIGQAADVAAAGQLYARGLVPQLLA--FALFCPMQRF 185

Query: 508 LNSMGVASVMAAFTLAINSF 567
           L +  + + +A  T+A+  F
Sbjct: 186 LQAQNIVNPVAYITMAVLIF 205


>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 301 ETGLTPTQGTLVIILNHSIGMLLSFFGGPLLRRFGYRKV-AAVGAILIS 444
           + GL+P+   +V++         + F G L+ RFG+ K+  A G+IL++
Sbjct: 46  DIGLSPSDAAVVMLSGQLADGFATIFVGELIDRFGHFKLWHAGGSILVA 94


>09_01_0076 +
           1105331-1105453,1106559-1106705,1107046-1107195,
           1107272-1107531,1107897-1108084,1108187-1108311,
           1108485-1108521,1108802-1108893,1109023-1109133,
           1109242-1109352,1109576-1109669,1109833-1109945,
           1110316-1110411,1110510-1110617,1110665-1110814,
           1110910-1110990,1111205-1111276,1111553-1111646,
           1111759-1111787,1111870-1111967,1112065-1112160,
           1112399-1112620,1113002-1113158,1113472-1113627,
           1113703-1113930
          Length = 1045

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 509 RILYDKMKTQKLDAKLVNMSPAEISIAPTAATFRYPNRRSN 387
           R+L D +        +  +SPA+I+   T  T +Y NR  N
Sbjct: 328 RLLQDSLGGNSKTVMIACISPADINAEETLNTLKYANRARN 368


>01_01_0469 -
           3456067-3456123,3456414-3456565,3456649-3456779,
           3456846-3458036,3458460-3458541,3458947-3458984,
           3459091-3459250,3459356-3459557,3460245-3460329,
           3460809-3460863,3461230-3461325,3461807-3461940,
           3462031-3462043,3462315-3462419,3462935-3463121
          Length = 895

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 404 PNRRSNGPPKNDNNIPIL*LSIITKVPCVGVKPVSSNAS 288
           P   S+GP   DN +P L  ++++  P  G+K ++S  S
Sbjct: 54  PISHSSGPETVDNVVPPLDCTLLSASPIEGLKKITSACS 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,170
Number of Sequences: 37544
Number of extensions: 289445
Number of successful extensions: 724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)